Results 1 - 20 of 1257 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6617 | 5' | -65.4 | NC_001847.1 | + | 71490 | 0.66 | 0.492501 |
Target: 5'- cCGGCaacGGUGgcGGCgGUGCGCgGUGcCu -3' miRNA: 3'- -GCCG---CCGCuuCCGgCGCGCGgCGCuG- -5' |
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6617 | 5' | -65.4 | NC_001847.1 | + | 62087 | 0.66 | 0.491597 |
Target: 5'- gGGCGG-Guc-GCCGCGCGUCauguacagguucuGCGGCg -3' miRNA: 3'- gCCGCCgCuucCGGCGCGCGG-------------CGCUG- -5' |
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6617 | 5' | -65.4 | NC_001847.1 | + | 122686 | 0.66 | 0.491597 |
Target: 5'- -aGCcGCGGAGGCuccgccgCGCGCGCUGUGcCg -3' miRNA: 3'- gcCGcCGCUUCCG-------GCGCGCGGCGCuG- -5' |
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6617 | 5' | -65.4 | NC_001847.1 | + | 50776 | 0.66 | 0.487088 |
Target: 5'- -cGCGGUccgcGGCCGCucaauacaccucgcgGCGCUGCGGCc -3' miRNA: 3'- gcCGCCGcuu-CCGGCG---------------CGCGGCGCUG- -5' |
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6617 | 5' | -65.4 | NC_001847.1 | + | 58124 | 0.66 | 0.487088 |
Target: 5'- gCGGCGGaUGAGcgccaggaccuccuGGUCGCuguccucgaggcggGCGaCCGCGGCg -3' miRNA: 3'- -GCCGCC-GCUU--------------CCGGCG--------------CGC-GGCGCUG- -5' |
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6617 | 5' | -65.4 | NC_001847.1 | + | 22466 | 0.66 | 0.487088 |
Target: 5'- aGGCGGC-AGGaGCCGUcgcagguggggcaagGCugGCCGUGGCu -3' miRNA: 3'- gCCGCCGcUUC-CGGCG---------------CG--CGGCGCUG- -5' |
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6617 | 5' | -65.4 | NC_001847.1 | + | 95542 | 0.66 | 0.483496 |
Target: 5'- uGG-GGCuGGGGCCGCGCcgcagcagcGCUGgGGCc -3' miRNA: 3'- gCCgCCGcUUCCGGCGCG---------CGGCgCUG- -5' |
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6617 | 5' | -65.4 | NC_001847.1 | + | 90743 | 0.66 | 0.483496 |
Target: 5'- -cGCGGCGcguGGCCGgGCcCCGgGAg -3' miRNA: 3'- gcCGCCGCuu-CCGGCgCGcGGCgCUg -5' |
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6617 | 5' | -65.4 | NC_001847.1 | + | 59616 | 0.66 | 0.483496 |
Target: 5'- uCGcGCGGUGc--GCCGUGCGCUGCu-- -3' miRNA: 3'- -GC-CGCCGCuucCGGCGCGCGGCGcug -5' |
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6617 | 5' | -65.4 | NC_001847.1 | + | 121969 | 0.66 | 0.491597 |
Target: 5'- cCGGUGGCGugaacugcguGGCUGCcaGCagcccaaccgccgGCCGCGGCn -3' miRNA: 3'- -GCCGCCGCuu--------CCGGCG--CG-------------CGGCGCUG- -5' |
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6617 | 5' | -65.4 | NC_001847.1 | + | 11975 | 0.66 | 0.492501 |
Target: 5'- aGGCgugccguuGGCGggGGCuCGCGCaaacCCGCu-- -3' miRNA: 3'- gCCG--------CCGCuuCCG-GCGCGc---GGCGcug -5' |
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6617 | 5' | -65.4 | NC_001847.1 | + | 12673 | 0.66 | 0.492501 |
Target: 5'- aCGGCGacGCGAAGcugcaCUGCGCGUCgGCGGg -3' miRNA: 3'- -GCCGC--CGCUUCc----GGCGCGCGG-CGCUg -5' |
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6617 | 5' | -65.4 | NC_001847.1 | + | 106293 | 0.66 | 0.492501 |
Target: 5'- cCGGCGucgcGCGcgcGGCCGCGCguucuagcaGCCGCa-- -3' miRNA: 3'- -GCCGC----CGCuu-CCGGCGCG---------CGGCGcug -5' |
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6617 | 5' | -65.4 | NC_001847.1 | + | 97551 | 0.66 | 0.492501 |
Target: 5'- gGGcCGGCccccGGCCGcCGCaGCCGCaGCg -3' miRNA: 3'- gCC-GCCGcuu-CCGGC-GCG-CGGCGcUG- -5' |
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6617 | 5' | -65.4 | NC_001847.1 | + | 77830 | 0.66 | 0.492501 |
Target: 5'- uGGCGGUGcAGGGCucacgagcuCGCG-GCC-CGGCa -3' miRNA: 3'- gCCGCCGC-UUCCG---------GCGCgCGGcGCUG- -5' |
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6617 | 5' | -65.4 | NC_001847.1 | + | 42390 | 0.66 | 0.492501 |
Target: 5'- gCGGCugcacGGCGAGGuccuggccuGCCaCGCGCUGCG-Cg -3' miRNA: 3'- -GCCG-----CCGCUUC---------CGGcGCGCGGCGCuG- -5' |
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6617 | 5' | -65.4 | NC_001847.1 | + | 34357 | 0.66 | 0.492501 |
Target: 5'- cCGGCcgGGagaGAAGGCCaGCgaGCGCCauggcgcgggGCGACc -3' miRNA: 3'- -GCCG--CCg--CUUCCGG-CG--CGCGG----------CGCUG- -5' |
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6617 | 5' | -65.4 | NC_001847.1 | + | 98892 | 0.66 | 0.492501 |
Target: 5'- gGGCGGCccAGGCCGgGaGCU-CGGCa -3' miRNA: 3'- gCCGCCGcuUCCGGCgCgCGGcGCUG- -5' |
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6617 | 5' | -65.4 | NC_001847.1 | + | 75294 | 0.66 | 0.492501 |
Target: 5'- uCGGCGaccGCGccuGGCCgGUGCcCCGCGAg -3' miRNA: 3'- -GCCGC---CGCuu-CCGG-CGCGcGGCGCUg -5' |
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6617 | 5' | -65.4 | NC_001847.1 | + | 48079 | 0.66 | 0.492501 |
Target: 5'- gCGGgGGCGcacGCCGCGCggaaGCUGCaGCa -3' miRNA: 3'- -GCCgCCGCuucCGGCGCG----CGGCGcUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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