miRNA display CGI


Results 21 - 40 of 1257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6617 5' -65.4 NC_001847.1 + 103811 0.82 0.040901
Target:  5'- cCGGCGGCGGcacgcgcuccaccAGGCCGC-CGCCcGCGGCg -3'
miRNA:   3'- -GCCGCCGCU-------------UCCGGCGcGCGG-CGCUG- -5'
6617 5' -65.4 NC_001847.1 + 490 0.82 0.040901
Target:  5'- gCGGCGGCGGGgcGGCCGCGCGCCaaccccccuguccGCGGa -3'
miRNA:   3'- -GCCGCCGCUU--CCGGCGCGCGG-------------CGCUg -5'
6617 5' -65.4 NC_001847.1 + 103303 0.82 0.040901
Target:  5'- gCGGCGGCGGGgcGGCCGCGCGCCaaccccccuguccGCGGa -3'
miRNA:   3'- -GCCGCCGCUU--CCGGCGCGCGG-------------CGCUg -5'
6617 5' -65.4 NC_001847.1 + 15010 0.82 0.041006
Target:  5'- uCGGCcGCGGugGGGCCGCGCgaGCCGCGGCc -3'
miRNA:   3'- -GCCGcCGCU--UCCGGCGCG--CGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 104891 0.82 0.041006
Target:  5'- uGGCGGCGAgcgccccgcgGGGCC-CGCGCgGCGGCg -3'
miRNA:   3'- gCCGCCGCU----------UCCGGcGCGCGgCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 73869 0.82 0.041006
Target:  5'- gCGGCGGCGcGGcGCCcgcGCGCGCCGCgGACg -3'
miRNA:   3'- -GCCGCCGCuUC-CGG---CGCGCGGCG-CUG- -5'
6617 5' -65.4 NC_001847.1 + 2078 0.82 0.041006
Target:  5'- uGGCGGCGAgcgccccgcgGGGCC-CGCGCgGCGGCg -3'
miRNA:   3'- gCCGCCGCU----------UCCGGcGCGCGgCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 998 0.82 0.041967
Target:  5'- gCGGCGGCGGcacgcgcuccaccAGGCCGC-CGCCcGCGGCg -3'
miRNA:   3'- -GCCGCCGCU-------------UCCGGCGcGCGG-CGCUG- -5'
6617 5' -65.4 NC_001847.1 + 30257 0.82 0.042075
Target:  5'- uGGCGGCGuu-GCaGCGCGCCGCGGCg -3'
miRNA:   3'- gCCGCCGCuucCGgCGCGCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 93294 0.82 0.042075
Target:  5'- uCGGCGGCGcgcAGGCCGCGCGCgCGUGu- -3'
miRNA:   3'- -GCCGCCGCu--UCCGGCGCGCG-GCGCug -5'
6617 5' -65.4 NC_001847.1 + 52198 0.81 0.04317
Target:  5'- aGGCGGCcu-GGCCGCGgGUCGCGGCc -3'
miRNA:   3'- gCCGCCGcuuCCGGCGCgCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 67304 0.81 0.04317
Target:  5'- -cGCGGCGAcggcccuuuuuGGGCCGCGCggacGCCGCGGCu -3'
miRNA:   3'- gcCGCCGCU-----------UCCGGCGCG----CGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 3969 0.81 0.044294
Target:  5'- cCGGCGGCGAgggcgccggGGGCCGgGCGC-GCGGCc -3'
miRNA:   3'- -GCCGCCGCU---------UCCGGCgCGCGgCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 43236 0.81 0.044294
Target:  5'- uGGCGGUGggGGCgCGCGgGCggCGCGGCg -3'
miRNA:   3'- gCCGCCGCuuCCG-GCGCgCG--GCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 34756 0.81 0.046627
Target:  5'- gCGGCcgagcuGGCGc-GGCUGCGCGCCGCGGCc -3'
miRNA:   3'- -GCCG------CCGCuuCCGGCGCGCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 81092 0.81 0.046627
Target:  5'- uGGCGGCGGccucGCCGCGCGCCGaCGAg -3'
miRNA:   3'- gCCGCCGCUuc--CGGCGCGCGGC-GCUg -5'
6617 5' -65.4 NC_001847.1 + 21198 0.81 0.047838
Target:  5'- cCGGCGGCGuAGGagaCGC-CGCCGCGACc -3'
miRNA:   3'- -GCCGCCGCuUCCg--GCGcGCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 65435 0.81 0.04908
Target:  5'- aGGCGGCa---GCCGCGCGCCGCGGa -3'
miRNA:   3'- gCCGCCGcuucCGGCGCGCGGCGCUg -5'
6617 5' -65.4 NC_001847.1 + 100352 0.81 0.04908
Target:  5'- gCGGCcGCGGGucguaGCCGCGCGCCGCGGCc -3'
miRNA:   3'- -GCCGcCGCUUc----CGGCGCGCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 31425 0.81 0.04908
Target:  5'- cCGGCgGGCGgcGGCCgGCG-GCCGCGGCg -3'
miRNA:   3'- -GCCG-CCGCuuCCGG-CGCgCGGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.