miRNA display CGI


Results 21 - 40 of 1257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6617 5' -65.4 NC_001847.1 + 124952 0.81 0.050353
Target:  5'- cCGGCGGCGgcGGCgGCGCGCaaaaGcCGGCg -3'
miRNA:   3'- -GCCGCCGCuuCCGgCGCGCGg---C-GCUG- -5'
6617 5' -65.4 NC_001847.1 + 21198 0.81 0.047838
Target:  5'- cCGGCGGCGuAGGagaCGC-CGCCGCGACc -3'
miRNA:   3'- -GCCGCCGCuUCCg--GCGcGCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 5173 0.82 0.038849
Target:  5'- uCGGCGGCGAuuucggggaacAGcGCCgcgagcgcggcaaGCGCGCCGCGACg -3'
miRNA:   3'- -GCCGCCGCU-----------UC-CGG-------------CGCGCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 69443 0.86 0.018857
Target:  5'- gCGGUGGCGGAcGGCgGCGCGCgCGCGGCg -3'
miRNA:   3'- -GCCGCCGCUU-CCGgCGCGCG-GCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 51375 0.79 0.064981
Target:  5'- aCGGUGacgcucGCGGAGGCCGCG-GUCGCGGCg -3'
miRNA:   3'- -GCCGC------CGCUUCCGGCGCgCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 5398 0.8 0.055774
Target:  5'- cCGGCGGCacAGGCCGCGCGCUcaGUGAg -3'
miRNA:   3'- -GCCGCCGcuUCCGGCGCGCGG--CGCUg -5'
6617 5' -65.4 NC_001847.1 + 43236 0.81 0.044294
Target:  5'- uGGCGGUGggGGCgCGCGgGCggCGCGGCg -3'
miRNA:   3'- gCCGCCGCuuCCG-GCGCgCG--GCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 105024 0.87 0.018373
Target:  5'- gGGCGGCaguAGGCCGCcaGCGCCGCGGCg -3'
miRNA:   3'- gCCGCCGcu-UCCGGCG--CGCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 103270 0.8 0.055774
Target:  5'- gCGGCGGCGgcGGCgGCG-GCgGCGGCa -3'
miRNA:   3'- -GCCGCCGCuuCCGgCGCgCGgCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 133212 0.88 0.014532
Target:  5'- cCGGCGGCccGAGuGGCCGcCGCGCCGCGGCg -3'
miRNA:   3'- -GCCGCCG--CUU-CCGGC-GCGCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 34756 0.81 0.046627
Target:  5'- gCGGCcgagcuGGCGc-GGCUGCGCGCCGCGGCc -3'
miRNA:   3'- -GCCG------CCGCuuCCGGCGCGCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 51942 0.8 0.054368
Target:  5'- cCGGgGcGCGAcGGCCGCGCGaccCCGCGGCa -3'
miRNA:   3'- -GCCgC-CGCUuCCGGCGCGC---GGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 104891 0.82 0.041006
Target:  5'- uGGCGGCGAgcgccccgcgGGGCC-CGCGCgGCGGCg -3'
miRNA:   3'- gCCGCCGCU----------UCCGGcGCGCGgCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 103303 0.82 0.040901
Target:  5'- gCGGCGGCGGGgcGGCCGCGCGCCaaccccccuguccGCGGa -3'
miRNA:   3'- -GCCGCCGCUU--CCGGCGCGCGG-------------CGCUg -5'
6617 5' -65.4 NC_001847.1 + 34111 0.83 0.034237
Target:  5'- gCGGCGGCGGAGccugcggcgccuGCCGCGguggcCGCCGCGGCg -3'
miRNA:   3'- -GCCGCCGCUUC------------CGGCGC-----GCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 37573 0.84 0.027838
Target:  5'- gCGGCGGCGcuGGCCGCuGCgGCUGCGGCg -3'
miRNA:   3'- -GCCGCCGCuuCCGGCG-CG-CGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 9466 0.79 0.069942
Target:  5'- cCGGCucGGaugaccacguauaCGAAGaGCUGCGCGCCGCGACg -3'
miRNA:   3'- -GCCG--CC-------------GCUUC-CGGCGCGCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 13130 0.79 0.066652
Target:  5'- gGGCGGCGccGcGCCGCcUGCCGCGGCc -3'
miRNA:   3'- gCCGCCGCuuC-CGGCGcGCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 18962 0.8 0.058693
Target:  5'- gGGCGGCGAcgaccagcgcGGCCGCgGCGCcCGCGGCc -3'
miRNA:   3'- gCCGCCGCUu---------CCGGCG-CGCG-GCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 105968 0.8 0.055774
Target:  5'- cCGGCGGCGcggcGGGCCGCcuccaGCGCCucGCGGCa -3'
miRNA:   3'- -GCCGCCGCu---UCCGGCG-----CGCGG--CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.