miRNA display CGI


Results 1 - 20 of 1257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6617 5' -65.4 NC_001847.1 + 135131 0.74 0.147766
Target:  5'- gGGUcGCaGggGGcCCGCGCGgCGCGGCg -3'
miRNA:   3'- gCCGcCG-CuuCC-GGCGCGCgGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 135028 0.67 0.398316
Target:  5'- gGGCGGggcCGggGcGCgGgGCGCCG-GACc -3'
miRNA:   3'- gCCGCC---GCuuC-CGgCgCGCGGCgCUG- -5'
6617 5' -65.4 NC_001847.1 + 134961 0.71 0.236941
Target:  5'- gCGGgGGCGggGGCCccGgGgGCCaaGACg -3'
miRNA:   3'- -GCCgCCGCuuCCGG--CgCgCGGcgCUG- -5'
6617 5' -65.4 NC_001847.1 + 134876 0.66 0.438881
Target:  5'- uCGGCGGCccccGGgcucgggccccugGGcGCCGgGCGUCGgGGCg -3'
miRNA:   3'- -GCCGCCG----CU-------------UC-CGGCgCGCGGCgCUG- -5'
6617 5' -65.4 NC_001847.1 + 134778 0.68 0.359486
Target:  5'- gCGGCGcGCGGggcGGGCCcCGgGgCGCGAa -3'
miRNA:   3'- -GCCGC-CGCU---UCCGGcGCgCgGCGCUg -5'
6617 5' -65.4 NC_001847.1 + 134555 0.66 0.448308
Target:  5'- gCGGCcGCGGAGGgccaggacCCG-GCGCCGgaGACg -3'
miRNA:   3'- -GCCGcCGCUUCC--------GGCgCGCGGCg-CUG- -5'
6617 5' -65.4 NC_001847.1 + 134515 0.84 0.027838
Target:  5'- uCGGgGGCGGggggaggcgcGGGCCGCGCGCCGCuGCg -3'
miRNA:   3'- -GCCgCCGCU----------UCCGGCGCGCGGCGcUG- -5'
6617 5' -65.4 NC_001847.1 + 134500 0.76 0.102207
Target:  5'- gGGUGuaGuguGGGCCGUGCgGCCGCGGCg -3'
miRNA:   3'- gCCGCcgCu--UCCGGCGCG-CGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 134361 0.7 0.271372
Target:  5'- uCGGaCGaCGAcgAGGCCG-GCGCCGcCGGCg -3'
miRNA:   3'- -GCC-GCcGCU--UCCGGCgCGCGGC-GCUG- -5'
6617 5' -65.4 NC_001847.1 + 134264 0.76 0.11011
Target:  5'- nCGGCcccGGCGcGGGCCGC-CGCCGCG-Cg -3'
miRNA:   3'- -GCCG---CCGCuUCCGGCGcGCGGCGCuG- -5'
6617 5' -65.4 NC_001847.1 + 134238 0.81 0.04908
Target:  5'- cCGGCgGGCGgcGGCCgGCG-GCCGCGGCg -3'
miRNA:   3'- -GCCG-CCGCuuCCGG-CGCgCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 134226 0.7 0.253677
Target:  5'- gCGGCGGUggGAAGGCCGgGUccGCCuCGAg -3'
miRNA:   3'- -GCCGCCG--CUUCCGGCgCG--CGGcGCUg -5'
6617 5' -65.4 NC_001847.1 + 134166 0.7 0.283712
Target:  5'- cCGGCGGCGGAagccccgccGGcCCGgGUGCCgGCG-Ca -3'
miRNA:   3'- -GCCGCCGCUU---------CC-GGCgCGCGG-CGCuG- -5'
6617 5' -65.4 NC_001847.1 + 134135 0.73 0.170718
Target:  5'- gGGCGGCGGccuGGUggagCGCGUGCCGCcGCc -3'
miRNA:   3'- gCCGCCGCUu--CCG----GCGCGCGGCGcUG- -5'
6617 5' -65.4 NC_001847.1 + 134043 0.79 0.066652
Target:  5'- gCGGCGGCGccGcCCGCG-GCCGCGGCg -3'
miRNA:   3'- -GCCGCCGCuuCcGGCGCgCGGCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 133977 0.67 0.398316
Target:  5'- aGGCGcCG-GGGCUGggaGCGCgCGCGGCa -3'
miRNA:   3'- gCCGCcGCuUCCGGCg--CGCG-GCGCUG- -5'
6617 5' -65.4 NC_001847.1 + 133971 0.72 0.191775
Target:  5'- gCGGCGGUGGccuucugcgcGGCCGCGCugccggaGCCGCG-Cg -3'
miRNA:   3'- -GCCGCCGCUu---------CCGGCGCG-------CGGCGCuG- -5'
6617 5' -65.4 NC_001847.1 + 133929 0.68 0.352044
Target:  5'- gGGCGGCGcgcgcuGGaGCUG-GCGCC-CGACg -3'
miRNA:   3'- gCCGCCGCu-----UC-CGGCgCGCGGcGCUG- -5'
6617 5' -65.4 NC_001847.1 + 133858 0.66 0.469256
Target:  5'- aGGCGGCcagccaccGcgccgccaaccgcugGGGGCUcgGCGCGCCGCuGCg -3'
miRNA:   3'- gCCGCCG--------C---------------UUCCGG--CGCGCGGCGcUG- -5'
6617 5' -65.4 NC_001847.1 + 133779 0.67 0.406399
Target:  5'- cCGGCgcucgacgGGCGcaaggacauGGCCGCGCagGgCGCGGCg -3'
miRNA:   3'- -GCCG--------CCGCuu-------CCGGCGCG--CgGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.