miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6631 3' -53.1 NC_001847.1 + 17672 0.66 0.96087
Target:  5'- --cGGCGGCUCGCggUCcGCCGGGc-- -3'
miRNA:   3'- uuuCUGCCGGGCGa-AGaUGGCUUaga -5'
6631 3' -53.1 NC_001847.1 + 51296 0.66 0.957085
Target:  5'- gGAAG-UGGCCCGCgaggacguagcUCUGCacgaGGAUCUg -3'
miRNA:   3'- -UUUCuGCCGGGCGa----------AGAUGg---CUUAGA- -5'
6631 3' -53.1 NC_001847.1 + 81957 0.66 0.957085
Target:  5'- --uGGCGGCgCGCcaCaGCCGggUCg -3'
miRNA:   3'- uuuCUGCCGgGCGaaGaUGGCuuAGa -5'
6631 3' -53.1 NC_001847.1 + 53366 0.66 0.955902
Target:  5'- --uGGCGGCCgcgggcaccgcgagCGCgcCUGCCGAGUUUu -3'
miRNA:   3'- uuuCUGCCGG--------------GCGaaGAUGGCUUAGA- -5'
6631 3' -53.1 NC_001847.1 + 46101 0.66 0.953057
Target:  5'- ----cCGGCCCGCUUCcGCgGGggCUg -3'
miRNA:   3'- uuucuGCCGGGCGAAGaUGgCUuaGA- -5'
6631 3' -53.1 NC_001847.1 + 30763 0.66 0.952641
Target:  5'- ---cGCGGCCCGCUgcagcgccgcgcgUCUGCgGGcgCg -3'
miRNA:   3'- uuucUGCCGGGCGA-------------AGAUGgCUuaGa -5'
6631 3' -53.1 NC_001847.1 + 105927 0.66 0.948783
Target:  5'- ---cGCGGCCCGCcgCgGCCGAGa-- -3'
miRNA:   3'- uuucUGCCGGGCGaaGaUGGCUUaga -5'
6631 3' -53.1 NC_001847.1 + 131293 0.66 0.948783
Target:  5'- -uGGAgGGCCCGCUgcugacgccuUCUGgCGAggCg -3'
miRNA:   3'- uuUCUgCCGGGCGA----------AGAUgGCUuaGa -5'
6631 3' -53.1 NC_001847.1 + 28480 0.66 0.948783
Target:  5'- -uGGAgGGCCCGCUgcugacgccuUCUGgCGAggCg -3'
miRNA:   3'- uuUCUgCCGGGCGA----------AGAUgGCUuaGa -5'
6631 3' -53.1 NC_001847.1 + 3114 0.66 0.948783
Target:  5'- ---cGCGGCCCGCcgCgGCCGAGa-- -3'
miRNA:   3'- uuucUGCCGGGCGaaGaUGGCUUaga -5'
6631 3' -53.1 NC_001847.1 + 93803 0.66 0.948783
Target:  5'- ---cGCGGCCgCGCg---GCCGAGUCc -3'
miRNA:   3'- uuucUGCCGG-GCGaagaUGGCUUAGa -5'
6631 3' -53.1 NC_001847.1 + 20487 0.66 0.944258
Target:  5'- aGAAGACGGCCUGUaugCUaugcucccGCCGGA-CUa -3'
miRNA:   3'- -UUUCUGCCGGGCGaa-GA--------UGGCUUaGA- -5'
6631 3' -53.1 NC_001847.1 + 14171 0.66 0.944258
Target:  5'- --cGACGGCCgCGCUUaCgcggcGCUGggUCc -3'
miRNA:   3'- uuuCUGCCGG-GCGAA-Ga----UGGCuuAGa -5'
6631 3' -53.1 NC_001847.1 + 32117 0.67 0.939479
Target:  5'- ---uGCGGCCCGCccgCcGCCGGcgCUg -3'
miRNA:   3'- uuucUGCCGGGCGaa-GaUGGCUuaGA- -5'
6631 3' -53.1 NC_001847.1 + 29463 0.67 0.934444
Target:  5'- --cGGCGGCCCGCgcgUCgGCCugGGcgCUg -3'
miRNA:   3'- uuuCUGCCGGGCGa--AGaUGG--CUuaGA- -5'
6631 3' -53.1 NC_001847.1 + 132276 0.67 0.934444
Target:  5'- --cGGCGGCCCGCgcgUCgGCCugGGcgCUg -3'
miRNA:   3'- uuuCUGCCGGGCGa--AGaUGG--CUuaGA- -5'
6631 3' -53.1 NC_001847.1 + 50379 0.67 0.933927
Target:  5'- uAAGGACGGCgCCGCcgccggcUUCcACCGcuUCUa -3'
miRNA:   3'- -UUUCUGCCG-GGCG-------AAGaUGGCuuAGA- -5'
6631 3' -53.1 NC_001847.1 + 57934 0.67 0.929152
Target:  5'- --cGGCGGCCCGCggCU-CCGucgCg -3'
miRNA:   3'- uuuCUGCCGGGCGaaGAuGGCuuaGa -5'
6631 3' -53.1 NC_001847.1 + 101479 0.67 0.929152
Target:  5'- cAAGGGCGGCgCGCUagcgACCGAggCg -3'
miRNA:   3'- -UUUCUGCCGgGCGAaga-UGGCUuaGa -5'
6631 3' -53.1 NC_001847.1 + 113068 0.67 0.929152
Target:  5'- -----gGGCCCGCUUUUcggaGCCGAGUg- -3'
miRNA:   3'- uuucugCCGGGCGAAGA----UGGCUUAga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.