miRNA display CGI


Results 21 - 40 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6653 3' -59.7 NC_001847.1 + 107864 0.66 0.712944
Target:  5'- gGCgGCUCcgacgggacggacgGcGGGCCGGGAgcgggcggCAGUGCGGc -3'
miRNA:   3'- -CGgCGAG--------------C-CCCGGUUCUa-------GUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 110906 0.66 0.705092
Target:  5'- cGCCGCgCGGcGGCUgaacgugGAGAUCgccgAGCGCc- -3'
miRNA:   3'- -CGGCGaGCC-CCGG-------UUCUAG----UCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 99604 0.66 0.702137
Target:  5'- cGCCGcCUCGGcagccacgaccucGCCGAGGaugcgcUCGGCGCGc -3'
miRNA:   3'- -CGGC-GAGCCc------------CGGUUCU------AGUCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 133900 0.66 0.725612
Target:  5'- nGCCGCUgCGGccgguguaccuGGCCugcGggCGGCGCGc -3'
miRNA:   3'- -CGGCGA-GCC-----------CCGGuu-CuaGUCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 129327 0.66 0.744838
Target:  5'- uGCCGggcgCGGGGCCGGGGgcguUCGGCcauGCu- -3'
miRNA:   3'- -CGGCga--GCCCCGGUUCU----AGUCG---CGcu -5'
6653 3' -59.7 NC_001847.1 + 35246 0.66 0.744838
Target:  5'- gGCCgGCgggCGcGcGGCgGAGAUCAGcCGCGc -3'
miRNA:   3'- -CGG-CGa--GC-C-CCGgUUCUAGUC-GCGCu -5'
6653 3' -59.7 NC_001847.1 + 105851 0.66 0.725612
Target:  5'- aGCaGCUCGGcGGCCcGGAgCAcGCGCu- -3'
miRNA:   3'- -CGgCGAGCC-CCGGuUCUaGU-CGCGcu -5'
6653 3' -59.7 NC_001847.1 + 68464 0.66 0.744838
Target:  5'- cCCGCggcCGGGGCCccgccgcgcGGGcgCaAGCGCGc -3'
miRNA:   3'- cGGCGa--GCCCCGG---------UUCuaG-UCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 85572 0.66 0.735268
Target:  5'- cGCCGC-CGucGGCCGAGAgguUCcGCGCa- -3'
miRNA:   3'- -CGGCGaGCc-CCGGUUCU---AGuCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 30466 0.66 0.725612
Target:  5'- gGCCGCUuucugcagcgCuGGGaCGcGAUCGGCGCGGc -3'
miRNA:   3'- -CGGCGA----------GcCCCgGUuCUAGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 43223 0.66 0.743885
Target:  5'- cGCCGUugcccgguggcggUgGGGGCgCGcGggCGGCGCGGc -3'
miRNA:   3'- -CGGCG-------------AgCCCCG-GUuCuaGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 98158 0.66 0.706075
Target:  5'- cGCCGCUCGgcgcGGGCCcgcucgcCGGCGCc- -3'
miRNA:   3'- -CGGCGAGC----CCCGGuucua--GUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 7173 0.66 0.735268
Target:  5'- aGCCG-UCGGuGGCguaCAGGAUUuggAGCGCGu -3'
miRNA:   3'- -CGGCgAGCC-CCG---GUUCUAG---UCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 13220 0.66 0.705092
Target:  5'- gGCCGCUCGGcgagcuccgcgauGGCCAgcgGGGcCA-CGCGGg -3'
miRNA:   3'- -CGGCGAGCC-------------CCGGU---UCUaGUcGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 63752 0.66 0.744838
Target:  5'- cGCCGCcuggcggCGcGGGCCAGGccCGgagaccGCGCGGa -3'
miRNA:   3'- -CGGCGa------GC-CCCGGUUCuaGU------CGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 46966 0.66 0.7227
Target:  5'- cCCGCgcccGGGCCAAGcgCAGCaggcaggugaauacGCGAa -3'
miRNA:   3'- cGGCGagc-CCCGGUUCuaGUCG--------------CGCU- -5'
6653 3' -59.7 NC_001847.1 + 45843 0.66 0.715878
Target:  5'- cGCUGggCGGcacGGCCGAGGccUCGGcCGCGGc -3'
miRNA:   3'- -CGGCgaGCC---CCGGUUCU--AGUC-GCGCU- -5'
6653 3' -59.7 NC_001847.1 + 47990 0.66 0.706075
Target:  5'- uGUCGCUCGcgcuGGCCAGcGUgCAGCGCu- -3'
miRNA:   3'- -CGGCGAGCc---CCGGUUcUA-GUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 13107 0.66 0.712944
Target:  5'- cGCCGCcguccuccUCGGcugcGGCCGcGAUCAGCaccccggucgcguuGCGAc -3'
miRNA:   3'- -CGGCG--------AGCC----CCGGUuCUAGUCG--------------CGCU- -5'
6653 3' -59.7 NC_001847.1 + 78058 0.66 0.735268
Target:  5'- cGCCcCUCGcGGCCAcGA-CGGCGCa- -3'
miRNA:   3'- -CGGcGAGCcCCGGUuCUaGUCGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.