miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6653 3' -59.7 NC_001847.1 + 58086 0.65 0.751481
Target:  5'- cGCCGCagCGGGuGCCGcGccgcuacuacuucugCGGCGCGGc -3'
miRNA:   3'- -CGGCGa-GCCC-CGGUuCua-------------GUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 85059 0.65 0.753369
Target:  5'- gGCCGagcaUCaGGGGCgCGGugccaauGAUCAGCGCc- -3'
miRNA:   3'- -CGGCg---AG-CCCCG-GUU-------CUAGUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 78058 0.66 0.735268
Target:  5'- cGCCcCUCGcGGCCAcGA-CGGCGCa- -3'
miRNA:   3'- -CGGcGAGCcCCGGUuCUaGUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 33568 0.66 0.706075
Target:  5'- cGCCGCggaGGcGGCCGuGcgCGGUGCcGAc -3'
miRNA:   3'- -CGGCGag-CC-CCGGUuCuaGUCGCG-CU- -5'
6653 3' -59.7 NC_001847.1 + 46966 0.66 0.7227
Target:  5'- cCCGCgcccGGGCCAAGcgCAGCaggcaggugaauacGCGAa -3'
miRNA:   3'- cGGCGagc-CCCGGUUCuaGUCG--------------CGCU- -5'
6653 3' -59.7 NC_001847.1 + 84611 0.66 0.712944
Target:  5'- cGCCGCUgcgucgccuucgagCGGGGCCAugccgcGGcugCuGCGCGc -3'
miRNA:   3'- -CGGCGA--------------GCCCCGGU------UCua-GuCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 121476 0.66 0.725612
Target:  5'- cGCgGCUCGuGGuuccacaccgcGCCgGAGAacCAGCGCGAg -3'
miRNA:   3'- -CGgCGAGC-CC-----------CGG-UUCUa-GUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 75140 0.66 0.725612
Target:  5'- cCCGC-CGGGGCCGg---CGGUGCu- -3'
miRNA:   3'- cGGCGaGCCCCGGUucuaGUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 107864 0.66 0.712944
Target:  5'- gGCgGCUCcgacgggacggacgGcGGGCCGGGAgcgggcggCAGUGCGGc -3'
miRNA:   3'- -CGgCGAG--------------C-CCCGGUUCUa-------GUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 105851 0.66 0.725612
Target:  5'- aGCaGCUCGGcGGCCcGGAgCAcGCGCu- -3'
miRNA:   3'- -CGgCGAGCC-CCGGuUCUaGU-CGCGcu -5'
6653 3' -59.7 NC_001847.1 + 26434 0.66 0.715878
Target:  5'- aGCCGCgagaCGGGGCagcgguAGG-CcGCGCGGc -3'
miRNA:   3'- -CGGCGa---GCCCCGgu----UCUaGuCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 45843 0.66 0.715878
Target:  5'- cGCUGggCGGcacGGCCGAGGccUCGGcCGCGGc -3'
miRNA:   3'- -CGGCgaGCC---CCGGUUCU--AGUC-GCGCU- -5'
6653 3' -59.7 NC_001847.1 + 85572 0.66 0.735268
Target:  5'- cGCCGC-CGucGGCCGAGAgguUCcGCGCa- -3'
miRNA:   3'- -CGGCGaGCc-CCGGUUCU---AGuCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 16920 0.66 0.715878
Target:  5'- gGCCGCUCGGcGCagacgccGGUCugcucaguGCGCGAc -3'
miRNA:   3'- -CGGCGAGCCcCGguu----CUAGu-------CGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 30466 0.66 0.725612
Target:  5'- gGCCGCUuucugcagcgCuGGGaCGcGAUCGGCGCGGc -3'
miRNA:   3'- -CGGCGA----------GcCCCgGUuCUAGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 41962 0.66 0.7227
Target:  5'- gGCCGUgcauagUGGGcggcagucugucucGCCGAGcgcugcGUCGGCGCGGa -3'
miRNA:   3'- -CGGCGa-----GCCC--------------CGGUUC------UAGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 41634 0.66 0.735268
Target:  5'- gGCCGCgagCGGcGcGCCGGGG--GGcCGCGAg -3'
miRNA:   3'- -CGGCGa--GCC-C-CGGUUCUagUC-GCGCU- -5'
6653 3' -59.7 NC_001847.1 + 86054 0.66 0.735268
Target:  5'- aGgCGCUgGGGGCCAcGGAUgCgAGCGUc- -3'
miRNA:   3'- -CgGCGAgCCCCGGU-UCUA-G-UCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 133900 0.66 0.725612
Target:  5'- nGCCGCUgCGGccgguguaccuGGCCugcGggCGGCGCGc -3'
miRNA:   3'- -CGGCGA-GCC-----------CCGGuu-CuaGUCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 17565 0.66 0.725612
Target:  5'- aGCCGUUCuGGGCUAcGAaCAGCaGCa- -3'
miRNA:   3'- -CGGCGAGcCCCGGUuCUaGUCG-CGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.