miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6653 3' -59.7 NC_001847.1 + 63 0.69 0.575138
Target:  5'- uGCgGCgggCGGGGgCGgggugggGGAUgGGCGCGGa -3'
miRNA:   3'- -CGgCGa--GCCCCgGU-------UCUAgUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 1191 0.69 0.545527
Target:  5'- cGCCGCggccggcagcucgUCGGGcGCCAGcucCAGCGCGc -3'
miRNA:   3'- -CGGCG-------------AGCCC-CGGUUcuaGUCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 1255 0.67 0.697201
Target:  5'- gGCCGCagCGGcGcGCCGAGcccccagcgguuggCGGCGCGGu -3'
miRNA:   3'- -CGGCGa-GCC-C-CGGUUCua------------GUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 1513 0.66 0.735268
Target:  5'- aGCCGCgcguaGGcGGCCucGGcgC-GCGCGAa -3'
miRNA:   3'- -CGGCGag---CC-CCGGu-UCuaGuCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 1595 0.77 0.182648
Target:  5'- cGCCGCUC-GGGCCAGcGcgCGGCGCa- -3'
miRNA:   3'- -CGGCGAGcCCCGGUU-CuaGUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 1925 0.68 0.616138
Target:  5'- cGCCGCggcgCGGcGGCCAcucGGGccgcCGGCGCu- -3'
miRNA:   3'- -CGGCGa---GCC-CCGGU---UCUa---GUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 2548 0.68 0.596084
Target:  5'- cGCUGCUCuccggcGGGCUGucuUCGGCGCGGg -3'
miRNA:   3'- -CGGCGAGc-----CCCGGUucuAGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 2900 0.69 0.546507
Target:  5'- cGCCGUUC-GGGCCGGacGGUCGGUGUc- -3'
miRNA:   3'- -CGGCGAGcCCCGGUU--CUAGUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 2908 0.75 0.25002
Target:  5'- aCCGCgcgagCGGGGCCAcGGUCcgcgccgccAGCGCGGc -3'
miRNA:   3'- cGGCGa----GCCCCGGUuCUAG---------UCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 2945 0.67 0.676339
Target:  5'- nGCCGCcuccagcgCGGcGGCCGcc-UCGGCGCGc -3'
miRNA:   3'- -CGGCGa-------GCC-CCGGUucuAGUCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 2981 0.73 0.351749
Target:  5'- cGCCGC-CGGGGCCGgcgcuGGAgccGCGCGc -3'
miRNA:   3'- -CGGCGaGCCCCGGU-----UCUaguCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 3038 0.66 0.725612
Target:  5'- aGCaGCUCGGcGGCCcGGAgCAcGCGCu- -3'
miRNA:   3'- -CGgCGAGCC-CCGGuUCUaGU-CGCGcu -5'
6653 3' -59.7 NC_001847.1 + 3579 0.77 0.206429
Target:  5'- aGCCGC-CGGGGCUGAGGaagUCGGCGUc- -3'
miRNA:   3'- -CGGCGaGCCCCGGUUCU---AGUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 4545 0.66 0.744838
Target:  5'- gGCCGCcCGcGGGU--GGcgCGGCGUGGa -3'
miRNA:   3'- -CGGCGaGC-CCCGguUCuaGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 5051 0.66 0.712944
Target:  5'- gGCgGCUCcgacgggacggacgGcGGGCCGGGAgcgggcggCAGUGCGGc -3'
miRNA:   3'- -CGgCGAG--------------C-CCCGGUUCUa-------GUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 6086 0.67 0.690269
Target:  5'- gGCgCGCUCGcGGaggcgcgagacgcccGCgAGGcgCGGCGCGAg -3'
miRNA:   3'- -CG-GCGAGC-CC---------------CGgUUCuaGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 6401 0.69 0.545527
Target:  5'- cGCCGCgaaggaaaccaagUCGGGGaaggcgagucCCGAGGgguuaggCGGCGCGGc -3'
miRNA:   3'- -CGGCG-------------AGCCCC----------GGUUCUa------GUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 6682 0.69 0.546507
Target:  5'- gGCCGCggCGGccGGCCGGGcgCGcGCGCa- -3'
miRNA:   3'- -CGGCGa-GCC--CCGGUUCuaGU-CGCGcu -5'
6653 3' -59.7 NC_001847.1 + 6783 0.68 0.626186
Target:  5'- aGCUGCUCcGuGGCCAccagCAGCGCGu -3'
miRNA:   3'- -CGGCGAGcC-CCGGUucuaGUCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 7173 0.66 0.735268
Target:  5'- aGCCG-UCGGuGGCguaCAGGAUUuggAGCGCGu -3'
miRNA:   3'- -CGGCgAGCC-CCG---GUUCUAG---UCGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.