miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6653 3' -59.7 NC_001847.1 + 99470 1.1 0.000952
Target:  5'- cGCCGCUCGGGGCCAAGAUCAGCGCGAu -3'
miRNA:   3'- -CGGCGAGCCCCGGUUCUAGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 68225 0.82 0.085015
Target:  5'- gGCCGCggCGGGGCCGcaAGcacgcuugcAUCAGCGCGAa -3'
miRNA:   3'- -CGGCGa-GCCCCGGU--UC---------UAGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 101160 0.8 0.131843
Target:  5'- gGCCGgggcCGGGGCCGGGGUCggGGCGCGGu -3'
miRNA:   3'- -CGGCga--GCCCCGGUUCUAG--UCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 102030 0.79 0.142266
Target:  5'- cGCCGCcgCGGucGGCCAGGAU-GGCGCGAg -3'
miRNA:   3'- -CGGCGa-GCC--CCGGUUCUAgUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 101079 0.78 0.161322
Target:  5'- cGCCGCg-GGGGCC-GGGUCGGCGgGGc -3'
miRNA:   3'- -CGGCGagCCCCGGuUCUAGUCGCgCU- -5'
6653 3' -59.7 NC_001847.1 + 104408 0.77 0.182648
Target:  5'- cGCCGCUC-GGGCCAGcGcgCGGCGCa- -3'
miRNA:   3'- -CGGCGAGcCCCGGUU-CuaGUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 1595 0.77 0.182648
Target:  5'- cGCCGCUC-GGGCCAGcGcgCGGCGCa- -3'
miRNA:   3'- -CGGCGAGcCCCGGUU-CuaGUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 90326 0.77 0.187202
Target:  5'- gGCCGC-CGGGGCCGGGGgcgCAGcCGCc- -3'
miRNA:   3'- -CGGCGaGCCCCGGUUCUa--GUC-GCGcu -5'
6653 3' -59.7 NC_001847.1 + 123498 0.77 0.19661
Target:  5'- cGCCGCaagCGGGGCCGGGGcCAGgGCu- -3'
miRNA:   3'- -CGGCGa--GCCCCGGUUCUaGUCgCGcu -5'
6653 3' -59.7 NC_001847.1 + 3579 0.77 0.206429
Target:  5'- aGCCGC-CGGGGCUGAGGaagUCGGCGUc- -3'
miRNA:   3'- -CGGCGaGCCCCGGUUCU---AGUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 34322 0.77 0.206429
Target:  5'- aGCCGC-CcGGGCCGAGGUCGGcCGCa- -3'
miRNA:   3'- -CGGCGaGcCCCGGUUCUAGUC-GCGcu -5'
6653 3' -59.7 NC_001847.1 + 127033 0.76 0.211496
Target:  5'- cCCGCgguuguaCGGGGCCAcguGGGUCGGCGCc- -3'
miRNA:   3'- cGGCGa------GCCCCGGU---UCUAGUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 24220 0.76 0.211496
Target:  5'- cCCGCgguuguaCGGGGCCAcguGGGUCGGCGCc- -3'
miRNA:   3'- cGGCGa------GCCCCGGU---UCUAGUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 95640 0.76 0.216669
Target:  5'- gGCCGCUCuGGcGCgGGGggCGGCGCGGg -3'
miRNA:   3'- -CGGCGAGcCC-CGgUUCuaGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 95667 0.76 0.216669
Target:  5'- gGCCGCUCuGGcGCgGGGggCGGCGCGGg -3'
miRNA:   3'- -CGGCGAGcCC-CGgUUCuaGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 95694 0.76 0.216669
Target:  5'- gGCCGCUCuGGcGCgGGGggCGGCGCGGg -3'
miRNA:   3'- -CGGCGAGcCC-CGgUUCuaGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 95721 0.76 0.216669
Target:  5'- gGCCGCUCuGGcGCgGGGggCGGCGCGGg -3'
miRNA:   3'- -CGGCGAGcCC-CGgUUCuaGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 95775 0.76 0.216669
Target:  5'- gGCCGCUCuGGcGCgGGGggCGGCGCGGg -3'
miRNA:   3'- -CGGCGAGcCC-CGgUUCuaGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 95748 0.76 0.216669
Target:  5'- gGCCGCUCuGGcGCgGGGggCGGCGCGGg -3'
miRNA:   3'- -CGGCGAGcCC-CGgUUCuaGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 130919 0.76 0.238455
Target:  5'- uGCC-CUCGGGGCCAGGAccgaGGCcgGCGAc -3'
miRNA:   3'- -CGGcGAGCCCCGGUUCUag--UCG--CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.