miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6653 3' -59.7 NC_001847.1 + 45530 0.71 0.425547
Target:  5'- gGCgCGgaCGGGGCCGugccGcgCAGCGCGu -3'
miRNA:   3'- -CG-GCgaGCCCCGGUu---CuaGUCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 100741 0.74 0.300933
Target:  5'- cGCCGagcuCUCGGGGCCGGGGUCcaGGuCGCc- -3'
miRNA:   3'- -CGGC----GAGCCCCGGUUCUAG--UC-GCGcu -5'
6653 3' -59.7 NC_001847.1 + 135132 0.74 0.307832
Target:  5'- gGUCGCagGGGGCCcgcgcGGcgCGGCGCGGa -3'
miRNA:   3'- -CGGCGagCCCCGGu----UCuaGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 18763 0.74 0.314851
Target:  5'- cGCCGCggcuaaggCGGcGGCCGA---CAGCGCGAg -3'
miRNA:   3'- -CGGCGa-------GCC-CCGGUUcuaGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 31094 0.73 0.33663
Target:  5'- cGgCGCU-GGGGCCGGG--CAGCGCGGu -3'
miRNA:   3'- -CgGCGAgCCCCGGUUCuaGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 92215 0.73 0.33663
Target:  5'- gGCCGCUUGGgcGGCCAg---CAGCGCGc -3'
miRNA:   3'- -CGGCGAGCC--CCGGUucuaGUCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 134557 0.72 0.375316
Target:  5'- gGCCGCggaGGGCCAGGAccCGGCGCc- -3'
miRNA:   3'- -CGGCGagcCCCGGUUCUa-GUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 105793 0.72 0.383406
Target:  5'- cGCCGC-CGGGGCCGcgcgcuGGAgccGCGCGc -3'
miRNA:   3'- -CGGCGaGCCCCGGU------UCUaguCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 60850 0.72 0.391611
Target:  5'- cGCUGCgCGGcGCCAGGGcgucCAGCGCGGg -3'
miRNA:   3'- -CGGCGaGCCcCGGUUCUa---GUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 27518 0.74 0.294154
Target:  5'- cGCCGCggcggcggCGGGGacgcCCGAGAacggCGGCGCGGc -3'
miRNA:   3'- -CGGCGa-------GCCCC----GGUUCUa---GUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 135023 0.74 0.280954
Target:  5'- cCCGCgggCGGGGCCGGGGcgCGGgGCGc -3'
miRNA:   3'- cGGCGa--GCCCCGGUUCUa-GUCgCGCu -5'
6653 3' -59.7 NC_001847.1 + 130799 0.75 0.268229
Target:  5'- gGCCGCggcCGGGGCgGAGG-CGGcCGCGGc -3'
miRNA:   3'- -CGGCGa--GCCCCGgUUCUaGUC-GCGCU- -5'
6653 3' -59.7 NC_001847.1 + 68225 0.82 0.085015
Target:  5'- gGCCGCggCGGGGCCGcaAGcacgcuugcAUCAGCGCGAa -3'
miRNA:   3'- -CGGCGa-GCCCCGGU--UC---------UAGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 101160 0.8 0.131843
Target:  5'- gGCCGgggcCGGGGCCGGGGUCggGGCGCGGu -3'
miRNA:   3'- -CGGCga--GCCCCGGUUCUAG--UCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 101079 0.78 0.161322
Target:  5'- cGCCGCg-GGGGCC-GGGUCGGCGgGGc -3'
miRNA:   3'- -CGGCGagCCCCGGuUCUAGUCGCgCU- -5'
6653 3' -59.7 NC_001847.1 + 104408 0.77 0.182648
Target:  5'- cGCCGCUC-GGGCCAGcGcgCGGCGCa- -3'
miRNA:   3'- -CGGCGAGcCCCGGUU-CuaGUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 3579 0.77 0.206429
Target:  5'- aGCCGC-CGGGGCUGAGGaagUCGGCGUc- -3'
miRNA:   3'- -CGGCGaGCCCCGGUUCU---AGUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 127033 0.76 0.211496
Target:  5'- cCCGCgguuguaCGGGGCCAcguGGGUCGGCGCc- -3'
miRNA:   3'- cGGCGa------GCCCCGGU---UCUAGUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 130919 0.76 0.238455
Target:  5'- uGCC-CUCGGGGCCAGGAccgaGGCcgGCGAc -3'
miRNA:   3'- -CGGcGAGCCCCGGUUCUag--UCG--CGCU- -5'
6653 3' -59.7 NC_001847.1 + 105721 0.75 0.25002
Target:  5'- aCCGCgcgagCGGGGCCAcGGUCcgcgccgccAGCGCGGc -3'
miRNA:   3'- cGGCGa----GCCCCGGUuCUAG---------UCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.