miRNA display CGI


Results 21 - 40 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6653 3' -59.7 NC_001847.1 + 8464 0.68 0.626186
Target:  5'- gGCgGCgccGGGCCGGGggCGGCGCu- -3'
miRNA:   3'- -CGgCGagcCCCGGUUCuaGUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 10087 0.67 0.686298
Target:  5'- cGCCGCgcgCGGGaGCaCAAG--CGGCGgGGa -3'
miRNA:   3'- -CGGCGa--GCCC-CG-GUUCuaGUCGCgCU- -5'
6653 3' -59.7 NC_001847.1 + 10118 0.67 0.646288
Target:  5'- aGCCGCcuUCGcggcgagcGGGCCcGGccgUAGCGCGAg -3'
miRNA:   3'- -CGGCG--AGC--------CCCGGuUCua-GUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 10383 0.67 0.676339
Target:  5'- cGCCGCUcgcggCGGGGCCGcuuuaugacGGcccGUCccccGCGCGGu -3'
miRNA:   3'- -CGGCGA-----GCCCCGGU---------UC---UAGu---CGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 11290 0.66 0.706075
Target:  5'- gGCCGgggguCUCGGGGCCucAGGGcCGGgGCa- -3'
miRNA:   3'- -CGGC-----GAGCCCCGG--UUCUaGUCgCGcu -5'
6653 3' -59.7 NC_001847.1 + 11874 0.67 0.675341
Target:  5'- cGCUGCUaccaCGGuguaaucuggugcGGCCGGGGUCcgcgcuGGCGCGGc -3'
miRNA:   3'- -CGGCGA----GCC-------------CCGGUUCUAG------UCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 13107 0.66 0.712944
Target:  5'- cGCCGCcguccuccUCGGcugcGGCCGcGAUCAGCaccccggucgcguuGCGAc -3'
miRNA:   3'- -CGGCG--------AGCC----CCGGUuCUAGUCG--------------CGCU- -5'
6653 3' -59.7 NC_001847.1 + 13111 0.66 0.744838
Target:  5'- uGUCGCggcCGGGGCgCGcGggCGGCGCc- -3'
miRNA:   3'- -CGGCGa--GCCCCG-GUuCuaGUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 13220 0.66 0.705092
Target:  5'- gGCCGCUCGGcgagcuccgcgauGGCCAgcgGGGcCA-CGCGGg -3'
miRNA:   3'- -CGGCGAGCC-------------CCGGU---UCUaGUcGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 14151 0.68 0.596084
Target:  5'- gGCUGCgcagCGGcGGCCGGGG-CGGcCGCGc -3'
miRNA:   3'- -CGGCGa---GCC-CCGGUUCUaGUC-GCGCu -5'
6653 3' -59.7 NC_001847.1 + 14311 0.71 0.44316
Target:  5'- gGCCGCcucUCGGGGCCuc-AUCgAGCgGCGGg -3'
miRNA:   3'- -CGGCG---AGCCCCGGuucUAG-UCG-CGCU- -5'
6653 3' -59.7 NC_001847.1 + 14323 0.7 0.470327
Target:  5'- cGCUGCUCgcgguGGGGCCGGGcgugguggCGGCGCc- -3'
miRNA:   3'- -CGGCGAG-----CCCCGGUUCua------GUCGCGcu -5'
6653 3' -59.7 NC_001847.1 + 14659 0.69 0.556333
Target:  5'- cGCUGCgagCGGGGCgCGu-GUCGGCGUGc -3'
miRNA:   3'- -CGGCGa--GCCCCG-GUucUAGUCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 14890 0.66 0.744838
Target:  5'- -aCGCUaCGGGGCCG---UCcGCGCGc -3'
miRNA:   3'- cgGCGA-GCCCCGGUucuAGuCGCGCu -5'
6653 3' -59.7 NC_001847.1 + 15012 0.67 0.656326
Target:  5'- gGCCGCggUGGGGCCGcgcGAgccgCGGCcgccggGCGAg -3'
miRNA:   3'- -CGGCGa-GCCCCGGUu--CUa---GUCG------CGCU- -5'
6653 3' -59.7 NC_001847.1 + 15373 0.66 0.725612
Target:  5'- gGCCaGCcuUCGGGGC---GGUCGGCGuCGGg -3'
miRNA:   3'- -CGG-CG--AGCCCCGguuCUAGUCGC-GCU- -5'
6653 3' -59.7 NC_001847.1 + 16574 0.69 0.527027
Target:  5'- -aCGCgggacagCGGGGUCGGGG-CGGCGUGGg -3'
miRNA:   3'- cgGCGa------GCCCCGGUUCUaGUCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 16784 0.67 0.680327
Target:  5'- cGCCGCacggcggggucaUCGGgcaGGCCAaagagcccaaacuccGGAUCgguGGCGCGGg -3'
miRNA:   3'- -CGGCG------------AGCC---CCGGU---------------UCUAG---UCGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 16920 0.66 0.715878
Target:  5'- gGCCGCUCGGcGCagacgccGGUCugcucaguGCGCGAc -3'
miRNA:   3'- -CGGCGAGCCcCGguu----CUAGu-------CGCGCU- -5'
6653 3' -59.7 NC_001847.1 + 17565 0.66 0.725612
Target:  5'- aGCCGUUCuGGGCUAcGAaCAGCaGCa- -3'
miRNA:   3'- -CGGCGAGcCCCGGUuCUaGUCG-CGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.