miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6655 5' -57.6 NC_001847.1 + 2404 0.8 0.178192
Target:  5'- gCCcAGAGUCGUCCUCCcccgagGGGCCCcCCGc -3'
miRNA:   3'- -GGuUCUCAGCAGGAGG------CUCGGGaGGC- -5'
6655 5' -57.6 NC_001847.1 + 2676 0.69 0.715878
Target:  5'- gCCucGGAccCGUCCUCCGGGUCCgcCCGc -3'
miRNA:   3'- -GGu-UCUcaGCAGGAGGCUCGGGa-GGC- -5'
6655 5' -57.6 NC_001847.1 + 2684 0.76 0.314851
Target:  5'- gCAucGGcUCGUCCUCCGcGCCCUCCa -3'
miRNA:   3'- gGUucUC-AGCAGGAGGCuCGGGAGGc -5'
6655 5' -57.6 NC_001847.1 + 4403 0.8 0.201468
Target:  5'- cCCAGGcgcuGUccgCGUCCUCCGcGCCCUCCGc -3'
miRNA:   3'- -GGUUCu---CA---GCAGGAGGCuCGGGAGGC- -5'
6655 5' -57.6 NC_001847.1 + 4686 0.77 0.268229
Target:  5'- ---cGGGUCuUCCUCCGAGCCCcCCGu -3'
miRNA:   3'- gguuCUCAGcAGGAGGCUCGGGaGGC- -5'
6655 5' -57.6 NC_001847.1 + 9693 0.66 0.831431
Target:  5'- gCCGAcccgccCGUCCUCCGgccagccacgcgcgGGUCCUCCGg -3'
miRNA:   3'- -GGUUcuca--GCAGGAGGC--------------UCGGGAGGC- -5'
6655 5' -57.6 NC_001847.1 + 10675 0.7 0.630207
Target:  5'- gCCGGGGGgcUCGcCCUCCGgucgcgcccgggcgcGGCCCgcgCCGg -3'
miRNA:   3'- -GGUUCUC--AGCaGGAGGC---------------UCGGGa--GGC- -5'
6655 5' -57.6 NC_001847.1 + 21759 0.66 0.833884
Target:  5'- gCGGGGGggcCG-CCggcgCCGGGCCCggcgCCGg -3'
miRNA:   3'- gGUUCUCa--GCaGGa---GGCUCGGGa---GGC- -5'
6655 5' -57.6 NC_001847.1 + 21947 0.68 0.735268
Target:  5'- uCCGAGcucGUCGUCCgggcgCUGGGCCgCggcgCCGg -3'
miRNA:   3'- -GGUUCu--CAGCAGGa----GGCUCGG-Ga---GGC- -5'
6655 5' -57.6 NC_001847.1 + 29283 0.7 0.616138
Target:  5'- aCCcGGAGcgCGUgCUCCGGGCCg-CCGa -3'
miRNA:   3'- -GGuUCUCa-GCAgGAGGCUCGGgaGGC- -5'
6655 5' -57.6 NC_001847.1 + 33472 0.73 0.452118
Target:  5'- -gAAGAGUCGUCgUCgGGGCucagcaCCUCCGa -3'
miRNA:   3'- ggUUCUCAGCAGgAGgCUCG------GGAGGC- -5'
6655 5' -57.6 NC_001847.1 + 34523 0.68 0.735268
Target:  5'- gCCAGGcGGUCG-CCagggcCCGAGCCUggCCGg -3'
miRNA:   3'- -GGUUC-UCAGCaGGa----GGCUCGGGa-GGC- -5'
6655 5' -57.6 NC_001847.1 + 38931 0.68 0.744838
Target:  5'- -uGAGcGUCGUCgUcCCGGGCCCgggggCCGc -3'
miRNA:   3'- ggUUCuCAGCAGgA-GGCUCGGGa----GGC- -5'
6655 5' -57.6 NC_001847.1 + 39391 0.7 0.636238
Target:  5'- uCgGGGAGcCGgcgCCggCCGGGCuCCUCCGa -3'
miRNA:   3'- -GgUUCUCaGCa--GGa-GGCUCG-GGAGGC- -5'
6655 5' -57.6 NC_001847.1 + 48569 0.66 0.841942
Target:  5'- uCCAGGAuGUCGUgCUCCucGCCgUCg- -3'
miRNA:   3'- -GGUUCU-CAGCAgGAGGcuCGGgAGgc -5'
6655 5' -57.6 NC_001847.1 + 58834 0.66 0.841942
Target:  5'- gCGAGGGUCGgcaCUugggCCGGGCCCgcaCCu -3'
miRNA:   3'- gGUUCUCAGCa--GGa---GGCUCGGGa--GGc -5'
6655 5' -57.6 NC_001847.1 + 59186 0.69 0.686297
Target:  5'- gUCGAGGGggcCGUCgUagcCCGAGCCgUCCGc -3'
miRNA:   3'- -GGUUCUCa--GCAGgA---GGCUCGGgAGGC- -5'
6655 5' -57.6 NC_001847.1 + 59352 0.7 0.656326
Target:  5'- gCGAG-GUCGcgcgCCgcgCCGAGCCCgcggCCGu -3'
miRNA:   3'- gGUUCuCAGCa---GGa--GGCUCGGGa---GGC- -5'
6655 5' -57.6 NC_001847.1 + 69573 0.66 0.849817
Target:  5'- gUCAAG-GUCGacuagcUCCUCCGcgagcacguAGCCgUCCGc -3'
miRNA:   3'- -GGUUCuCAGC------AGGAGGC---------UCGGgAGGC- -5'
6655 5' -57.6 NC_001847.1 + 80440 0.66 0.864989
Target:  5'- cCCGcGcGUCGUCCUCCccgcGGGCgCCgCCGc -3'
miRNA:   3'- -GGUuCuCAGCAGGAGG----CUCG-GGaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.