Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6655 | 5' | -57.6 | NC_001847.1 | + | 101705 | 1.11 | 0.001556 |
Target: 5'- aCCAAGAGUCGUCCUCCGAGCCCUCCGa -3' miRNA: 3'- -GGUUCUCAGCAGGAGGCUCGGGAGGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 80440 | 0.66 | 0.864989 |
Target: 5'- cCCGcGcGUCGUCCUCCccgcGGGCgCCgCCGc -3' miRNA: 3'- -GGUuCuCAGCAGGAGG----CUCG-GGaGGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 91471 | 0.66 | 0.857502 |
Target: 5'- aCGAG-GUCGUcgagcaCCUgcggcgggccacCCGAGCCCUCgCGc -3' miRNA: 3'- gGUUCuCAGCA------GGA------------GGCUCGGGAG-GC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 92524 | 0.66 | 0.849817 |
Target: 5'- uCCGAGAuGUCG-CCgaugugCCGcauGCCCUUCa -3' miRNA: 3'- -GGUUCU-CAGCaGGa-----GGCu--CGGGAGGc -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 58834 | 0.66 | 0.841942 |
Target: 5'- gCGAGGGUCGgcaCUugggCCGGGCCCgcaCCu -3' miRNA: 3'- gGUUCUCAGCa--GGa---GGCUCGGGa--GGc -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 48569 | 0.66 | 0.841942 |
Target: 5'- uCCAGGAuGUCGUgCUCCucGCCgUCg- -3' miRNA: 3'- -GGUUCU-CAGCAgGAGGcuCGGgAGgc -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 124572 | 0.66 | 0.833884 |
Target: 5'- gCGGGGGggcCG-CCggcgCCGGGCCCggcgCCGg -3' miRNA: 3'- gGUUCUCa--GCaGGa---GGCUCGGGa---GGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 9693 | 0.66 | 0.831431 |
Target: 5'- gCCGAcccgccCGUCCUCCGgccagccacgcgcgGGUCCUCCGg -3' miRNA: 3'- -GGUUcuca--GCAGGAGGC--------------UCGGGAGGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 21947 | 0.68 | 0.735268 |
Target: 5'- uCCGAGcucGUCGUCCgggcgCUGGGCCgCggcgCCGg -3' miRNA: 3'- -GGUUCu--CAGCAGGa----GGCUCGG-Ga---GGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 105489 | 0.69 | 0.715878 |
Target: 5'- gCCucGGAccCGUCCUCCGGGUCCgcCCGc -3' miRNA: 3'- -GGu-UCUcaGCAGGAGGCUCGGGa-GGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 105217 | 0.8 | 0.178192 |
Target: 5'- gCCcAGAGUCGUCCUCCcccgagGGGCCCcCCGc -3' miRNA: 3'- -GGuUCUCAGCAGGAGG------CUCGGGaGGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 107216 | 0.8 | 0.201468 |
Target: 5'- cCCAGGcgcuGUccgCGUCCUCCGcGCCCUCCGc -3' miRNA: 3'- -GGUUCu---CA---GCAGGAGGCuCGGGAGGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 107499 | 0.77 | 0.268229 |
Target: 5'- ---cGGGUCuUCCUCCGAGCCCcCCGu -3' miRNA: 3'- gguuCUCAGcAGGAGGCUCGGGaGGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 2684 | 0.76 | 0.314851 |
Target: 5'- gCAucGGcUCGUCCUCCGcGCCCUCCa -3' miRNA: 3'- gGUucUC-AGCAGGAGGCuCGGGAGGc -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 132096 | 0.7 | 0.616138 |
Target: 5'- aCCcGGAGcgCGUgCUCCGGGCCg-CCGa -3' miRNA: 3'- -GGuUCUCa-GCAgGAGGCUCGGgaGGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 113488 | 0.7 | 0.630207 |
Target: 5'- gCCGGGGGgcUCGcCCUCCGgucgcgcccgggcgcGGCCCgcgCCGg -3' miRNA: 3'- -GGUUCUC--AGCaGGAGGC---------------UCGGGa--GGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 59186 | 0.69 | 0.686297 |
Target: 5'- gUCGAGGGggcCGUCgUagcCCGAGCCgUCCGc -3' miRNA: 3'- -GGUUCUCa--GCAGgA---GGCUCGGgAGGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 121764 | 0.66 | 0.864989 |
Target: 5'- gCCGAGAGcgCGUagcgcucauuugCCguguagCCGGGCgCCUCUGa -3' miRNA: 3'- -GGUUCUCa-GCA------------GGa-----GGCUCG-GGAGGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 4403 | 0.8 | 0.201468 |
Target: 5'- cCCAGGcgcuGUccgCGUCCUCCGcGCCCUCCGc -3' miRNA: 3'- -GGUUCu---CA---GCAGGAGGCuCGGGAGGC- -5' |
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6655 | 5' | -57.6 | NC_001847.1 | + | 4686 | 0.77 | 0.268229 |
Target: 5'- ---cGGGUCuUCCUCCGAGCCCcCCGu -3' miRNA: 3'- gguuCUCAGcAGGAGGCUCGGGaGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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