miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6656 5' -56.3 NC_001847.1 + 7611 0.7 0.681409
Target:  5'- -gCGGGGUGGgGUggggggGUGGGUGGGGGGg -3'
miRNA:   3'- agGCUCCGCUgCGa-----CACCUACUCUCU- -5'
6656 5' -56.3 NC_001847.1 + 8441 0.68 0.788769
Target:  5'- gUCgGAGGCGGCGCc--GGGUcGGAGGc -3'
miRNA:   3'- -AGgCUCCGCUGCGacaCCUAcUCUCU- -5'
6656 5' -56.3 NC_001847.1 + 8602 0.71 0.619971
Target:  5'- gCCaGGGGCGGCGCUcGgccgggGGcgGGGGGAg -3'
miRNA:   3'- aGG-CUCCGCUGCGA-Ca-----CCuaCUCUCU- -5'
6656 5' -56.3 NC_001847.1 + 12632 0.68 0.759722
Target:  5'- aUgGAGGCGGCcgcugcgGCUGcGGggGAGAGGa -3'
miRNA:   3'- aGgCUCCGCUG-------CGACaCCuaCUCUCU- -5'
6656 5' -56.3 NC_001847.1 + 13551 0.71 0.589267
Target:  5'- gCCGGGGCGGCGCgGUGGGUu----- -3'
miRNA:   3'- aGGCUCCGCUGCGaCACCUAcucucu -5'
6656 5' -56.3 NC_001847.1 + 16846 0.67 0.840894
Target:  5'- aUCGGGGCGGCGCUcgaggcgaGcGGGcuccugGAGAGAc -3'
miRNA:   3'- aGGCUCCGCUGCGA--------CaCCUa-----CUCUCU- -5'
6656 5' -56.3 NC_001847.1 + 24333 0.67 0.824199
Target:  5'- gCgGGGGCGAUGUccaaGUGGAgGGGGGGc -3'
miRNA:   3'- aGgCUCCGCUGCGa---CACCUaCUCUCU- -5'
6656 5' -56.3 NC_001847.1 + 26079 0.66 0.864487
Target:  5'- cUCGaAGGCaAUGCUGggGGcgGAGGGAg -3'
miRNA:   3'- aGGC-UCCGcUGCGACa-CCuaCUCUCU- -5'
6656 5' -56.3 NC_001847.1 + 27540 0.66 0.879174
Target:  5'- cCCGAgaacGGCGGCGCgGcGGcUGGGAGc -3'
miRNA:   3'- aGGCU----CCGCUGCGaCaCCuACUCUCu -5'
6656 5' -56.3 NC_001847.1 + 27736 0.66 0.892977
Target:  5'- gCCGAGcUGugGCggaugGUGGGcgGGGAGGa -3'
miRNA:   3'- aGGCUCcGCugCGa----CACCUa-CUCUCU- -5'
6656 5' -56.3 NC_001847.1 + 29671 0.66 0.856825
Target:  5'- gUCCGAGGCGgaggACGggGaGGAcgGGGAGGa -3'
miRNA:   3'- -AGGCUCCGC----UGCgaCaCCUa-CUCUCU- -5'
6656 5' -56.3 NC_001847.1 + 35553 0.66 0.864487
Target:  5'- gCCGAGGCGGCGCgcgaccGcGAcGAGGGc -3'
miRNA:   3'- aGGCUCCGCUGCGaca---C-CUaCUCUCu -5'
6656 5' -56.3 NC_001847.1 + 36134 0.76 0.373961
Target:  5'- cCCGAGGCaGCGCUGUGGuacGAGGa- -3'
miRNA:   3'- aGGCUCCGcUGCGACACCua-CUCUcu -5'
6656 5' -56.3 NC_001847.1 + 37430 0.7 0.650758
Target:  5'- uUCCGGgcgacuugcuGGCGGCGCUGUGGAcGAc--- -3'
miRNA:   3'- -AGGCU----------CCGCUGCGACACCUaCUcucu -5'
6656 5' -56.3 NC_001847.1 + 42909 0.68 0.797861
Target:  5'- cUCGGGGCuGACGCUgGUGGAUGu---- -3'
miRNA:   3'- aGGCUCCG-CUGCGA-CACCUACucucu -5'
6656 5' -56.3 NC_001847.1 + 54493 0.7 0.671221
Target:  5'- -aCGAcGGCGGCGCcgGggccgGGGUGGGGGGc -3'
miRNA:   3'- agGCU-CCGCUGCGa-Ca----CCUACUCUCU- -5'
6656 5' -56.3 NC_001847.1 + 55227 0.68 0.788769
Target:  5'- cUUCGuggcGGCGACGCUGU---UGGGGGAg -3'
miRNA:   3'- -AGGCu---CCGCUGCGACAccuACUCUCU- -5'
6656 5' -56.3 NC_001847.1 + 65734 0.66 0.892308
Target:  5'- gCCGGGGCGGCGCUcgagagcGUGG-UGGc--- -3'
miRNA:   3'- aGGCUCCGCUGCGA-------CACCuACUcucu -5'
6656 5' -56.3 NC_001847.1 + 68452 0.66 0.871939
Target:  5'- -gCGGGaGCGccCGCUGUGGAggcGAGGGu -3'
miRNA:   3'- agGCUC-CGCu-GCGACACCUa--CUCUCu -5'
6656 5' -56.3 NC_001847.1 + 68944 0.68 0.770168
Target:  5'- gCCGcuGGGCGGCGCcgaUGcGGAaGAGGGGg -3'
miRNA:   3'- aGGC--UCCGCUGCG---ACaCCUaCUCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.