Results 1 - 20 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6656 | 5' | -56.3 | NC_001847.1 | + | 102404 | 1.09 | 0.002397 |
Target: 5'- aUCCGAGGCGACGCUGUGGAUGAGAGAc -3' miRNA: 3'- -AGGCUCCGCUGCGACACCUACUCUCU- -5' |
|||||||
6656 | 5' | -56.3 | NC_001847.1 | + | 130549 | 0.66 | 0.892977 |
Target: 5'- gCCGAGcUGugGCggaugGUGGGcgGGGAGGa -3' miRNA: 3'- aGGCUCcGCugCGa----CACCUa-CUCUCU- -5' |
|||||||
6656 | 5' | -56.3 | NC_001847.1 | + | 65734 | 0.66 | 0.892308 |
Target: 5'- gCCGGGGCGGCGCUcgagagcGUGG-UGGc--- -3' miRNA: 3'- aGGCUCCGCUGCGA-------CACCuACUcucu -5' |
|||||||
6656 | 5' | -56.3 | NC_001847.1 | + | 96854 | 0.66 | 0.882007 |
Target: 5'- gUCgGGGGCGGCGgUGggcggcgguccgcgcUGGG-GAGGGAc -3' miRNA: 3'- -AGgCUCCGCUGCgAC---------------ACCUaCUCUCU- -5' |
|||||||
6656 | 5' | -56.3 | NC_001847.1 | + | 27540 | 0.66 | 0.879174 |
Target: 5'- cCCGAgaacGGCGGCGCgGcGGcUGGGAGc -3' miRNA: 3'- aGGCU----CCGCUGCGaCaCCuACUCUCu -5' |
|||||||
6656 | 5' | -56.3 | NC_001847.1 | + | 128892 | 0.66 | 0.864487 |
Target: 5'- cUCGaAGGCaAUGCUGggGGcgGAGGGAg -3' miRNA: 3'- aGGC-UCCGcUGCGACa-CCuaCUCUCU- -5' |
|||||||
6656 | 5' | -56.3 | NC_001847.1 | + | 35553 | 0.66 | 0.864487 |
Target: 5'- gCCGAGGCGGCGCgcgaccGcGAcGAGGGc -3' miRNA: 3'- aGGCUCCGCUGCGaca---C-CUaCUCUCu -5' |
|||||||
6656 | 5' | -56.3 | NC_001847.1 | + | 132484 | 0.66 | 0.856825 |
Target: 5'- gUCCGAGGCGgaggACGggGaGGAcgGGGAGGa -3' miRNA: 3'- -AGGCUCCGC----UGCgaCaCCUa-CUCUCU- -5' |
|||||||
6656 | 5' | -56.3 | NC_001847.1 | + | 127146 | 0.67 | 0.824199 |
Target: 5'- gCgGGGGCGAUGUccaaGUGGAgGGGGGGc -3' miRNA: 3'- aGgCUCCGCUGCGa---CACCUaCUCUCU- -5' |
|||||||
6656 | 5' | -56.3 | NC_001847.1 | + | 42909 | 0.68 | 0.797861 |
Target: 5'- cUCGGGGCuGACGCUgGUGGAUGu---- -3' miRNA: 3'- aGGCUCCG-CUGCGA-CACCUACucucu -5' |
|||||||
6656 | 5' | -56.3 | NC_001847.1 | + | 111254 | 0.68 | 0.788769 |
Target: 5'- gUCgGAGGCGGCGCc--GGGUcGGAGGc -3' miRNA: 3'- -AGgCUCCGCUGCGacaCCUAcUCUCU- -5' |
|||||||
6656 | 5' | -56.3 | NC_001847.1 | + | 111415 | 0.71 | 0.619971 |
Target: 5'- gCCaGGGGCGGCGCUcGgccgggGGcgGGGGGAg -3' miRNA: 3'- aGG-CUCCGCUGCGA-Ca-----CCuaCUCUCU- -5' |
|||||||
6656 | 5' | -56.3 | NC_001847.1 | + | 37430 | 0.7 | 0.650758 |
Target: 5'- uUCCGGgcgacuugcuGGCGGCGCUGUGGAcGAc--- -3' miRNA: 3'- -AGGCU----------CCGCUGCGACACCUaCUcucu -5' |
|||||||
6656 | 5' | -56.3 | NC_001847.1 | + | 54493 | 0.7 | 0.671221 |
Target: 5'- -aCGAcGGCGGCGCcgGggccgGGGUGGGGGGc -3' miRNA: 3'- agGCU-CCGCUGCGa-Ca----CCUACUCUCU- -5' |
|||||||
6656 | 5' | -56.3 | NC_001847.1 | + | 110424 | 0.7 | 0.681409 |
Target: 5'- -gCGGGGUGGgGUggggggGUGGGUGGGGGGg -3' miRNA: 3'- agGCUCCGCUgCGa-----CACCUACUCUCU- -5' |
|||||||
6656 | 5' | -56.3 | NC_001847.1 | + | 90105 | 0.69 | 0.741362 |
Target: 5'- aCCGcGGGgGGCGCUGaGGGUGAGc-- -3' miRNA: 3'- aGGC-UCCgCUGCGACaCCUACUCucu -5' |
|||||||
6656 | 5' | -56.3 | NC_001847.1 | + | 12632 | 0.68 | 0.759722 |
Target: 5'- aUgGAGGCGGCcgcugcgGCUGcGGggGAGAGGa -3' miRNA: 3'- aGgCUCCGCUG-------CGACaCCuaCUCUCU- -5' |
|||||||
6656 | 5' | -56.3 | NC_001847.1 | + | 68944 | 0.68 | 0.770168 |
Target: 5'- gCCGcuGGGCGGCGCcgaUGcGGAaGAGGGGg -3' miRNA: 3'- aGGC--UCCGCUGCG---ACaCCUaCUCUCU- -5' |
|||||||
6656 | 5' | -56.3 | NC_001847.1 | + | 73154 | 0.66 | 0.892977 |
Target: 5'- --gGAGGCGGCGCgccgGGcgGAG-GAg -3' miRNA: 3'- aggCUCCGCUGCGaca-CCuaCUCuCU- -5' |
|||||||
6656 | 5' | -56.3 | NC_001847.1 | + | 71403 | 0.72 | 0.568942 |
Target: 5'- gCCGccAGGCGGCGCUGUugcucggccgGGggGAGGGu -3' miRNA: 3'- aGGC--UCCGCUGCGACA----------CCuaCUCUCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home