miRNA display CGI


Results 21 - 40 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6657 3' -55.6 NC_001847.1 + 3945 0.71 0.636187
Target:  5'- gCCGcGGCGGggGgGGCGCcGUCuCCGGCg -3'
miRNA:   3'- -GGU-CCGUCuaCgUCGUGcUAG-GGUCG- -5'
6657 3' -55.6 NC_001847.1 + 3990 0.69 0.727235
Target:  5'- gCCGGGCGcGcgGCcccgcggGGCGcCGggCCCGGCg -3'
miRNA:   3'- -GGUCCGU-CuaCG-------UCGU-GCuaGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 4209 0.73 0.533706
Target:  5'- gCAGGCAGccaaaGCccuGCGCGGUgCCGGCg -3'
miRNA:   3'- gGUCCGUCua---CGu--CGUGCUAgGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 4880 0.66 0.885011
Target:  5'- gCGGGCAGcgGCAGgGCc--CCCGcGCc -3'
miRNA:   3'- gGUCCGUCuaCGUCgUGcuaGGGU-CG- -5'
6657 3' -55.6 NC_001847.1 + 5012 0.66 0.904974
Target:  5'- --cGGCGGcgGCGGCGCGGaggggaagcUCgggcgaCCGGCg -3'
miRNA:   3'- gguCCGUCuaCGUCGUGCU---------AG------GGUCG- -5'
6657 3' -55.6 NC_001847.1 + 5219 0.66 0.904974
Target:  5'- gCCGcGGCGGccgGCGGgGCGcgCgCGGCa -3'
miRNA:   3'- -GGU-CCGUCua-CGUCgUGCuaGgGUCG- -5'
6657 3' -55.6 NC_001847.1 + 5374 0.66 0.904974
Target:  5'- cCCAGGCuccgGCGGUcCGAgcggCCGGCg -3'
miRNA:   3'- -GGUCCGucuaCGUCGuGCUag--GGUCG- -5'
6657 3' -55.6 NC_001847.1 + 5573 0.66 0.899208
Target:  5'- --cGGCAGGuguUGCAGUACGGgugucaaaaagcgcgCCgCGGCg -3'
miRNA:   3'- gguCCGUCU---ACGUCGUGCUa--------------GG-GUCG- -5'
6657 3' -55.6 NC_001847.1 + 5617 0.69 0.767336
Target:  5'- aCGGGCGuggGCGcCGCGGUCCCGcGCg -3'
miRNA:   3'- gGUCCGUcuaCGUcGUGCUAGGGU-CG- -5'
6657 3' -55.6 NC_001847.1 + 5826 0.69 0.757721
Target:  5'- gCCGGGUgcGUGCAGCACccaCCCgaAGCg -3'
miRNA:   3'- -GGUCCGucUACGUCGUGcuaGGG--UCG- -5'
6657 3' -55.6 NC_001847.1 + 5923 0.68 0.795403
Target:  5'- gCUAGGCGGAUggGCGGCggacgACGggCCC-GCc -3'
miRNA:   3'- -GGUCCGUCUA--CGUCG-----UGCuaGGGuCG- -5'
6657 3' -55.6 NC_001847.1 + 6471 0.67 0.853632
Target:  5'- gCCAGGCAGucccgcacggccUGCAGguCGuagguagcggcGUCgCCGGCg -3'
miRNA:   3'- -GGUCCGUCu-----------ACGUCguGC-----------UAG-GGUCG- -5'
6657 3' -55.6 NC_001847.1 + 6678 0.67 0.862987
Target:  5'- gCUAGGCcGcgGCGGC-CGG-CCgGGCg -3'
miRNA:   3'- -GGUCCGuCuaCGUCGuGCUaGGgUCG- -5'
6657 3' -55.6 NC_001847.1 + 6746 0.67 0.830672
Target:  5'- gCGGGCGucgucugcGGUGCGGCcgguGCGAggCgCCAGCu -3'
miRNA:   3'- gGUCCGU--------CUACGUCG----UGCUa-G-GGUCG- -5'
6657 3' -55.6 NC_001847.1 + 6954 0.73 0.54275
Target:  5'- gCCAGGCgcgGGGUcGCGGCggcgcuuccgcccGCGGgccgCCCAGCa -3'
miRNA:   3'- -GGUCCG---UCUA-CGUCG-------------UGCUa---GGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 8140 0.67 0.84723
Target:  5'- gCGGGCGG-UGCuGCGCGAgggCUAGUu -3'
miRNA:   3'- gGUCCGUCuACGuCGUGCUag-GGUCG- -5'
6657 3' -55.6 NC_001847.1 + 8315 0.66 0.885011
Target:  5'- gCCAGGCuGucgGCAGgACGA--UCAGCc -3'
miRNA:   3'- -GGUCCGuCua-CGUCgUGCUagGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 8453 0.66 0.8919
Target:  5'- gCCGGGuCGGAgGCGGCGcCGggCCgGGg -3'
miRNA:   3'- -GGUCC-GUCUaCGUCGU-GCuaGGgUCg -5'
6657 3' -55.6 NC_001847.1 + 10605 0.69 0.780587
Target:  5'- --cGGCAGAcGCAGaCGCGGUagugggcgccauguaCCUAGCg -3'
miRNA:   3'- gguCCGUCUaCGUC-GUGCUA---------------GGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 10884 0.73 0.553871
Target:  5'- cCCAGGCAGAccgccUGCGGCAgcUGGUggCGGCg -3'
miRNA:   3'- -GGUCCGUCU-----ACGUCGU--GCUAggGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.