miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6657 3' -55.6 NC_001847.1 + 432 0.69 0.757721
Target:  5'- gCGGGCGGcgGCGGCGgCGG-CagCAGCg -3'
miRNA:   3'- gGUCCGUCuaCGUCGU-GCUaGg-GUCG- -5'
6657 3' -55.6 NC_001847.1 + 1018 0.66 0.911152
Target:  5'- aCCAGGCcgccgcccGCGGCGCG--CCgCAGCa -3'
miRNA:   3'- -GGUCCGucua----CGUCGUGCuaGG-GUCG- -5'
6657 3' -55.6 NC_001847.1 + 1239 0.7 0.697978
Target:  5'- gCAGGcCAGGUacaccggccgcaGCGGCGCGccgagccCCCAGCg -3'
miRNA:   3'- gGUCC-GUCUA------------CGUCGUGCua-----GGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 1409 0.67 0.830672
Target:  5'- aCAGGCAGGcacGCGGCccCGcgCCCcGCc -3'
miRNA:   3'- gGUCCGUCUa--CGUCGu-GCuaGGGuCG- -5'
6657 3' -55.6 NC_001847.1 + 1420 0.69 0.757721
Target:  5'- aCGGGCAccgcGguGCGCGggCCCAGg -3'
miRNA:   3'- gGUCCGUcua-CguCGUGCuaGGGUCg -5'
6657 3' -55.6 NC_001847.1 + 1549 0.69 0.747992
Target:  5'- cCCGGGCcgaAGAcGCGcCGCGAggCCAGCa -3'
miRNA:   3'- -GGUCCG---UCUaCGUcGUGCUagGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 1780 0.68 0.795403
Target:  5'- gCCAGGUcccgcgucgAGAgcaGCAGCACG--CCCuGCg -3'
miRNA:   3'- -GGUCCG---------UCUa--CGUCGUGCuaGGGuCG- -5'
6657 3' -55.6 NC_001847.1 + 1859 0.69 0.767335
Target:  5'- cCCAGGCGugcGAgucggcgcucaGCAGCAgcCGGUugCCCAGCg -3'
miRNA:   3'- -GGUCCGU---CUa----------CGUCGU--GCUA--GGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 1968 0.69 0.728232
Target:  5'- gCCGGGCGGcgccGcCAGCGCcucCCCGGCa -3'
miRNA:   3'- -GGUCCGUCua--C-GUCGUGcuaGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 2100 0.72 0.584513
Target:  5'- cCCGcGCGGcgGCGGgcCGCGAUCUCGGCc -3'
miRNA:   3'- -GGUcCGUCuaCGUC--GUGCUAGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 2296 0.72 0.574255
Target:  5'- --cGGCGGGgccgccggGCGGCAUGGgcCCCAGCa -3'
miRNA:   3'- gguCCGUCUa-------CGUCGUGCUa-GGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 2334 0.74 0.493251
Target:  5'- gCGGGCAGcgGCGGCucccgccGCGccggCCCGGCc -3'
miRNA:   3'- gGUCCGUCuaCGUCG-------UGCua--GGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 2633 0.67 0.850447
Target:  5'- --cGGCGGGaccgccgucgccgcuUGCGGCGCcuucgCCCGGCg -3'
miRNA:   3'- gguCCGUCU---------------ACGUCGUGcua--GGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 2842 0.7 0.71822
Target:  5'- gCGGGCuGAa-CAGCGCGcgCgCCAGCg -3'
miRNA:   3'- gGUCCGuCUacGUCGUGCuaG-GGUCG- -5'
6657 3' -55.6 NC_001847.1 + 3144 0.66 0.885011
Target:  5'- gCCcGGCGGcgccgGCGGCGCGGcgggccgccUCCAGCg -3'
miRNA:   3'- -GGuCCGUCua---CGUCGUGCUa--------GGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 3494 0.68 0.804468
Target:  5'- aCCGgcGGCAGcgGCGccGuCACGcUCCCGGUg -3'
miRNA:   3'- -GGU--CCGUCuaCGU--C-GUGCuAGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 3705 0.7 0.67751
Target:  5'- aCAGGUAGgcGCGGCaaucGCGcgCgCCGGCc -3'
miRNA:   3'- gGUCCGUCuaCGUCG----UGCuaG-GGUCG- -5'
6657 3' -55.6 NC_001847.1 + 3781 0.76 0.352333
Target:  5'- cCCGGGCGGGaugUGCuGCACGAcggcgUgCCGGCa -3'
miRNA:   3'- -GGUCCGUCU---ACGuCGUGCU-----AgGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 3811 0.81 0.19332
Target:  5'- gCCGGGCGGcgGCGGCGCGcugCCgGGCc -3'
miRNA:   3'- -GGUCCGUCuaCGUCGUGCua-GGgUCG- -5'
6657 3' -55.6 NC_001847.1 + 3936 0.66 0.877893
Target:  5'- gCuGGCAGcgggcgGCgAGCGCGAcCCaCAGCg -3'
miRNA:   3'- gGuCCGUCua----CG-UCGUGCUaGG-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.