miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6657 3' -55.6 NC_001847.1 + 65260 0.73 0.533706
Target:  5'- cCCGGGCcc--GCGGC-CGGUCCgCAGCg -3'
miRNA:   3'- -GGUCCGucuaCGUCGuGCUAGG-GUCG- -5'
6657 3' -55.6 NC_001847.1 + 75341 0.74 0.464561
Target:  5'- cCCGGGCGGGcgGCAGUgguaaaaGCGcGUCUCGGCg -3'
miRNA:   3'- -GGUCCGUCUa-CGUCG-------UGC-UAGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 80851 0.74 0.474982
Target:  5'- uCCGGGCGGcgGCGcGCGuCGAggccgUCCGGCa -3'
miRNA:   3'- -GGUCCGUCuaCGU-CGU-GCUa----GGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 105147 0.74 0.493251
Target:  5'- gCGGGCAGcgGCGGCucccgccGCGccggCCCGGCc -3'
miRNA:   3'- gGUCCGUCuaCGUCG-------UGCua--GGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 48735 0.74 0.494222
Target:  5'- aCgAGGCGGcgGUGCAGUAUGA-CUCAGCc -3'
miRNA:   3'- -GgUCCGUC--UACGUCGUGCUaGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 54589 0.73 0.513809
Target:  5'- gCUGGGCGGcgcugGCGGCGCGcgCCCGcGCc -3'
miRNA:   3'- -GGUCCGUCua---CGUCGUGCuaGGGU-CG- -5'
6657 3' -55.6 NC_001847.1 + 48704 0.73 0.523721
Target:  5'- uCCAGGCAGc-GCGGCGCGAUga-AGCg -3'
miRNA:   3'- -GGUCCGUCuaCGUCGUGCUAgggUCG- -5'
6657 3' -55.6 NC_001847.1 + 4209 0.73 0.533706
Target:  5'- gCAGGCAGccaaaGCccuGCGCGGUgCCGGCg -3'
miRNA:   3'- gGUCCGUCua---CGu--CGUGCUAgGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 63122 0.73 0.533706
Target:  5'- gCCAGcgccucguaaaaGCGGcUGUGGCACcgGAUCCCGGCg -3'
miRNA:   3'- -GGUC------------CGUCuACGUCGUG--CUAGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 47595 0.74 0.456124
Target:  5'- -aAGGcCGGcgGCAggucGCAgGAUCCCAGCg -3'
miRNA:   3'- ggUCC-GUCuaCGU----CGUgCUAGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 84922 0.75 0.445925
Target:  5'- cCCGGGCAGcacuugcGUGUAGCGCGAcaggaCUAGCu -3'
miRNA:   3'- -GGUCCGUC-------UACGUCGUGCUag---GGUCG- -5'
6657 3' -55.6 NC_001847.1 + 59547 0.75 0.419664
Target:  5'- gCAGGCGGuggggGCGGCggggGCGGUgCCGGCg -3'
miRNA:   3'- gGUCCGUCua---CGUCG----UGCUAgGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 25749 0.84 0.12794
Target:  5'- gCGGGCGGcgGCGGCACGGcaccgcagCCCAGCu -3'
miRNA:   3'- gGUCCGUCuaCGUCGUGCUa-------GGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 106624 0.81 0.19332
Target:  5'- gCCGGGCGGcgGCGGCGCGcugCCgGGCc -3'
miRNA:   3'- -GGUCCGUCuaCGUCGUGCua-GGgUCG- -5'
6657 3' -55.6 NC_001847.1 + 23774 0.8 0.208455
Target:  5'- gCCA-GCGGAUGCccgGGCGCGAggucgCCCAGCg -3'
miRNA:   3'- -GGUcCGUCUACG---UCGUGCUa----GGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 39595 0.79 0.266414
Target:  5'- cCCAGcGCuGcUGCGGCGCGGcCCCAGCc -3'
miRNA:   3'- -GGUC-CGuCuACGUCGUGCUaGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 124999 0.77 0.329134
Target:  5'- cUCGGGCgAGAgcUGCAGCAgCGccUCCCAGCa -3'
miRNA:   3'- -GGUCCG-UCU--ACGUCGU-GCu-AGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 55279 0.77 0.344473
Target:  5'- gCCGGGCccGGAcggGCGGCAguCGuGUCCCAGCg -3'
miRNA:   3'- -GGUCCG--UCUa--CGUCGU--GC-UAGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 3781 0.76 0.352333
Target:  5'- cCCGGGCGGGaugUGCuGCACGAcggcgUgCCGGCa -3'
miRNA:   3'- -GGUCCGUCU---ACGuCGUGCU-----AgGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 41821 0.76 0.352333
Target:  5'- gCGGGCGG--GCGGCGCgGGUCCCAGg -3'
miRNA:   3'- gGUCCGUCuaCGUCGUG-CUAGGGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.