miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6657 3' -55.6 NC_001847.1 + 102546 1.13 0.001428
Target:  5'- uCCAGGCAGAUGCAGCACGAUCCCAGCu -3'
miRNA:   3'- -GGUCCGUCUACGUCGUGCUAGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 25749 0.84 0.12794
Target:  5'- gCGGGCGGcgGCGGCACGGcaccgcagCCCAGCu -3'
miRNA:   3'- gGUCCGUCuaCGUCGUGCUa-------GGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 106624 0.81 0.19332
Target:  5'- gCCGGGCGGcgGCGGCGCGcugCCgGGCc -3'
miRNA:   3'- -GGUCCGUCuaCGUCGUGCua-GGgUCG- -5'
6657 3' -55.6 NC_001847.1 + 3811 0.81 0.19332
Target:  5'- gCCGGGCGGcgGCGGCGCGcugCCgGGCc -3'
miRNA:   3'- -GGUCCGUCuaCGUCGUGCua-GGgUCG- -5'
6657 3' -55.6 NC_001847.1 + 23774 0.8 0.208455
Target:  5'- gCCA-GCGGAUGCccgGGCGCGAggucgCCCAGCg -3'
miRNA:   3'- -GGUcCGUCUACG---UCGUGCUa----GGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 94153 0.8 0.213722
Target:  5'- gCCGGaGCAGGUG-AGCGCGG-CCCGGCg -3'
miRNA:   3'- -GGUC-CGUCUACgUCGUGCUaGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 129316 0.8 0.219104
Target:  5'- uUCGGGUGGGUGCuGCACGcaCCCGGCg -3'
miRNA:   3'- -GGUCCGUCUACGuCGUGCuaGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 39595 0.79 0.266414
Target:  5'- cCCAGcGCuGcUGCGGCGCGGcCCCAGCc -3'
miRNA:   3'- -GGUC-CGuCuACGUCGUGCUaGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 16704 0.78 0.307082
Target:  5'- gCC-GGCAGgcGCagacgAGCACGAUCaCCAGCg -3'
miRNA:   3'- -GGuCCGUCuaCG-----UCGUGCUAG-GGUCG- -5'
6657 3' -55.6 NC_001847.1 + 57954 0.77 0.321656
Target:  5'- gCGGGCA---GCAGCGCGGUCgCGGCg -3'
miRNA:   3'- gGUCCGUcuaCGUCGUGCUAGgGUCG- -5'
6657 3' -55.6 NC_001847.1 + 124999 0.77 0.329134
Target:  5'- cUCGGGCgAGAgcUGCAGCAgCGccUCCCAGCa -3'
miRNA:   3'- -GGUCCG-UCU--ACGUCGU-GCu-AGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 22186 0.77 0.329134
Target:  5'- cUCGGGCgAGAgcUGCAGCAgCGccUCCCAGCa -3'
miRNA:   3'- -GGUCCG-UCU--ACGUCGU-GCu-AGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 55279 0.77 0.344473
Target:  5'- gCCGGGCccGGAcggGCGGCAguCGuGUCCCAGCg -3'
miRNA:   3'- -GGUCCG--UCUa--CGUCGU--GC-UAGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 3781 0.76 0.352333
Target:  5'- cCCGGGCGGGaugUGCuGCACGAcggcgUgCCGGCa -3'
miRNA:   3'- -GGUCCGUCU---ACGuCGUGCU-----AgGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 41821 0.76 0.352333
Target:  5'- gCGGGCGG--GCGGCGCgGGUCCCAGg -3'
miRNA:   3'- gGUCCGUCuaCGUCGUG-CUAGGGUCg -5'
6657 3' -55.6 NC_001847.1 + 127581 0.76 0.360319
Target:  5'- gCCAGGCAGGUGUcgcGCAUGcgCUgAGCa -3'
miRNA:   3'- -GGUCCGUCUACGu--CGUGCuaGGgUCG- -5'
6657 3' -55.6 NC_001847.1 + 84568 0.75 0.410828
Target:  5'- uCCAGGUAGAa-CAGCAUGcgCgCCAGCa -3'
miRNA:   3'- -GGUCCGUCUacGUCGUGCuaG-GGUCG- -5'
6657 3' -55.6 NC_001847.1 + 56363 0.75 0.419664
Target:  5'- gCGGGCGcggGCGGCACGAcCUCGGCg -3'
miRNA:   3'- gGUCCGUcuaCGUCGUGCUaGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 59547 0.75 0.419664
Target:  5'- gCAGGCGGuggggGCGGCggggGCGGUgCCGGCg -3'
miRNA:   3'- gGUCCGUCua---CGUCG----UGCUAgGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 84922 0.75 0.445925
Target:  5'- cCCGGGCAGcacuugcGUGUAGCGCGAcaggaCUAGCu -3'
miRNA:   3'- -GGUCCGUC-------UACGUCGUGCUag---GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.