miRNA display CGI


Results 1 - 20 of 377 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6657 3' -55.6 NC_001847.1 + 68226 0.66 0.875713
Target:  5'- gCCGcGGCGGGgccgcaagcacgcuUGCaucAGCGCGAagcacUCCCGGUu -3'
miRNA:   3'- -GGU-CCGUCU--------------ACG---UCGUGCU-----AGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 80770 0.66 0.8919
Target:  5'- gCCGGcGCGGAc-CGGgACGA-CCCGGCc -3'
miRNA:   3'- -GGUC-CGUCUacGUCgUGCUaGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 48154 0.66 0.898556
Target:  5'- gCCGGGCcGgcGCGcGC-CGG-CCCGGCc -3'
miRNA:   3'- -GGUCCGuCuaCGU-CGuGCUaGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 91354 0.66 0.911152
Target:  5'- aCCGGcGCGccgGC-GCGCGcgUCCAGCa -3'
miRNA:   3'- -GGUC-CGUcuaCGuCGUGCuaGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 77905 0.66 0.8919
Target:  5'- --cGGCGGcgGUGGCGCaccUCUCGGCg -3'
miRNA:   3'- gguCCGUCuaCGUCGUGcu-AGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 14564 0.66 0.885011
Target:  5'- gCAGcGCGGGUGCuGGCGgGcgCgCGGCu -3'
miRNA:   3'- gGUC-CGUCUACG-UCGUgCuaGgGUCG- -5'
6657 3' -55.6 NC_001847.1 + 107693 0.66 0.885011
Target:  5'- gCGGGCAGcgGCAGgGCc--CCCGcGCc -3'
miRNA:   3'- gGUCCGUCuaCGUCgUGcuaGGGU-CG- -5'
6657 3' -55.6 NC_001847.1 + 111266 0.66 0.8919
Target:  5'- gCCGGGuCGGAgGCGGCGcCGggCCgGGg -3'
miRNA:   3'- -GGUCC-GUCUaCGUCGU-GCuaGGgUCg -5'
6657 3' -55.6 NC_001847.1 + 67262 0.66 0.8919
Target:  5'- -aGGGUuacgugGGGUGCcGC-CGuUCCCAGCg -3'
miRNA:   3'- ggUCCG------UCUACGuCGuGCuAGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 134040 0.66 0.877893
Target:  5'- gCCGcGGCGGcgccgcccGCGGcCGCGGcgCCCGGCg -3'
miRNA:   3'- -GGU-CCGUCua------CGUC-GUGCUa-GGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 43244 0.66 0.885011
Target:  5'- -gGGGCGcgcggGCGGCGCGGcgCCCGGg -3'
miRNA:   3'- ggUCCGUcua--CGUCGUGCUa-GGGUCg -5'
6657 3' -55.6 NC_001847.1 + 15042 0.66 0.8919
Target:  5'- gCCGGGCgAGcuGUGCgAGCGCcAUCugaCCGGCg -3'
miRNA:   3'- -GGUCCG-UC--UACG-UCGUGcUAG---GGUCG- -5'
6657 3' -55.6 NC_001847.1 + 34241 0.66 0.885011
Target:  5'- cCCAGuacGCGGc-GCGGCGCGAggcgcagaCCGGCg -3'
miRNA:   3'- -GGUC---CGUCuaCGUCGUGCUag------GGUCG- -5'
6657 3' -55.6 NC_001847.1 + 8315 0.66 0.885011
Target:  5'- gCCAGGCuGucgGCAGgACGA--UCAGCc -3'
miRNA:   3'- -GGUCCGuCua-CGUCgUGCUagGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 105957 0.66 0.885011
Target:  5'- gCCcGGCGGcgccgGCGGCGCGGcgggccgccUCCAGCg -3'
miRNA:   3'- -GGuCCGUCua---CGUCGUGCUa--------GGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 131320 0.66 0.898556
Target:  5'- gCgAGGCGuGGcccgGCAGCGCGccgccgccgCCCGGCc -3'
miRNA:   3'- -GgUCCGU-CUa---CGUCGUGCua-------GGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 71381 0.66 0.882899
Target:  5'- gCAGGC-GAUGCcccguaucaucaacGGCAacAUCCCGGUg -3'
miRNA:   3'- gGUCCGuCUACG--------------UCGUgcUAGGGUCG- -5'
6657 3' -55.6 NC_001847.1 + 60306 0.66 0.8919
Target:  5'- --cGGCGGGcgGCAGCGCGcgCgCCAccuGCu -3'
miRNA:   3'- gguCCGUCUa-CGUCGUGCuaG-GGU---CG- -5'
6657 3' -55.6 NC_001847.1 + 3936 0.66 0.877893
Target:  5'- gCuGGCAGcgggcgGCgAGCGCGAcCCaCAGCg -3'
miRNA:   3'- gGuCCGUCua----CG-UCGUGCUaGG-GUCG- -5'
6657 3' -55.6 NC_001847.1 + 16678 0.66 0.877893
Target:  5'- cCCGGGCcu-UGCgccgcaGGCACGAggccgccaCCAGCa -3'
miRNA:   3'- -GGUCCGucuACG------UCGUGCUag------GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.