miRNA display CGI


Results 41 - 60 of 758 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6659 5' -60 NC_001847.1 + 100614 0.66 0.720355
Target:  5'- ---cGGCCAgGCucGGGCCcuggcgaccGCCugGcUGCg -3'
miRNA:   3'- aguaCCGGUgCG--UCCGG---------CGGugC-ACG- -5'
6659 5' -60 NC_001847.1 + 99952 0.66 0.720355
Target:  5'- ----aGCCGCGCGcGCUccuccucgaagGCCGCGUGCc -3'
miRNA:   3'- aguacCGGUGCGUcCGG-----------CGGUGCACG- -5'
6659 5' -60 NC_001847.1 + 67453 0.66 0.720355
Target:  5'- cUCGaGGUCcagcgcGCGCGcGGCgGCCGCG-GCg -3'
miRNA:   3'- -AGUaCCGG------UGCGU-CCGgCGGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 47780 0.66 0.720355
Target:  5'- gUcgGGCCACGCGucGGCCucggcgcCCGCGaucgGCu -3'
miRNA:   3'- aGuaCCGGUGCGU--CCGGc------GGUGCa---CG- -5'
6659 5' -60 NC_001847.1 + 125020 0.66 0.720355
Target:  5'- ---cGGCCGgGCccGCuCGCCGCGaagGCg -3'
miRNA:   3'- aguaCCGGUgCGucCG-GCGGUGCa--CG- -5'
6659 5' -60 NC_001847.1 + 8064 0.66 0.720355
Target:  5'- ---cGGCCcgcGCGCAGaggggggcaCCGCCGCG-GCg -3'
miRNA:   3'- aguaCCGG---UGCGUCc--------GGCGGUGCaCG- -5'
6659 5' -60 NC_001847.1 + 5070 0.66 0.720355
Target:  5'- aCGgcgGGCCGggaGCGGGCgGCa--GUGCg -3'
miRNA:   3'- aGUa--CCGGUg--CGUCCGgCGgugCACG- -5'
6659 5' -60 NC_001847.1 + 32514 0.66 0.720355
Target:  5'- --cUGGCCGCGUAcacgcGGCUGUCggagGCGaUGCg -3'
miRNA:   3'- aguACCGGUGCGU-----CCGGCGG----UGC-ACG- -5'
6659 5' -60 NC_001847.1 + 16346 0.66 0.720355
Target:  5'- gCAcGGCCuggagGCGCuggcGGCUGCCG-GUGCc -3'
miRNA:   3'- aGUaCCGG-----UGCGu---CCGGCGGUgCACG- -5'
6659 5' -60 NC_001847.1 + 74417 0.66 0.720355
Target:  5'- ------nCGCGCGGGCCGCCgACGUa- -3'
miRNA:   3'- aguaccgGUGCGUCCGGCGG-UGCAcg -5'
6659 5' -60 NC_001847.1 + 107883 0.66 0.720355
Target:  5'- aCGgcgGGCCGggaGCGGGCgGCa--GUGCg -3'
miRNA:   3'- aGUa--CCGGUg--CGUCCGgCGgugCACG- -5'
6659 5' -60 NC_001847.1 + 69332 0.66 0.720355
Target:  5'- ---gGGCCucggGCGCugcuGGCgGCgCugGUGCu -3'
miRNA:   3'- aguaCCGG----UGCGu---CCGgCG-GugCACG- -5'
6659 5' -60 NC_001847.1 + 7251 0.66 0.720355
Target:  5'- -gGUGGCUGUGCGGG-CGCgGCGgggGCa -3'
miRNA:   3'- agUACCGGUGCGUCCgGCGgUGCa--CG- -5'
6659 5' -60 NC_001847.1 + 52261 0.66 0.719379
Target:  5'- ---cGGCUugGCugcGGCgCGCCcgcacgggcgagcACGUGCc -3'
miRNA:   3'- aguaCCGGugCGu--CCG-GCGG-------------UGCACG- -5'
6659 5' -60 NC_001847.1 + 65347 0.66 0.719379
Target:  5'- ---cGGCCGCGUacAGGCCGUugucguccgaucgCACcUGCu -3'
miRNA:   3'- aguaCCGGUGCG--UCCGGCG-------------GUGcACG- -5'
6659 5' -60 NC_001847.1 + 112265 0.66 0.719379
Target:  5'- cUCAUcaGCCGCGaCGaagccgugcacacGGCCGCguCGUGCu -3'
miRNA:   3'- -AGUAc-CGGUGC-GU-------------CCGGCGguGCACG- -5'
6659 5' -60 NC_001847.1 + 31603 0.66 0.714488
Target:  5'- -uGUGGCCagcccgagucccgguGgGCGGGCgCGCUA-GUGCa -3'
miRNA:   3'- agUACCGG---------------UgCGUCCG-GCGGUgCACG- -5'
6659 5' -60 NC_001847.1 + 97637 0.66 0.714488
Target:  5'- ---aGGCCACGCAgucGGgguuugggcccagacCCGCCGC-UGCc -3'
miRNA:   3'- aguaCCGGUGCGU---CC---------------GGCGGUGcACG- -5'
6659 5' -60 NC_001847.1 + 124907 0.66 0.710563
Target:  5'- ---gGGCC-CgGCAGGCgCGCCGgGgGCg -3'
miRNA:   3'- aguaCCGGuG-CGUCCG-GCGGUgCaCG- -5'
6659 5' -60 NC_001847.1 + 108071 0.66 0.710563
Target:  5'- gCGUGG--GCGCGGuGCCGCC-CGggggGCu -3'
miRNA:   3'- aGUACCggUGCGUC-CGGCGGuGCa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.