miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6660 5' -58.7 NC_001847.1 + 108525 1.09 0.001215
Target:  5'- gUUCAGGUGCGCCUGGGAGGGCUUACCu -3'
miRNA:   3'- -AAGUCCACGCGGACCCUCCCGAAUGG- -5'
6660 5' -58.7 NC_001847.1 + 5712 1.09 0.001215
Target:  5'- gUUCAGGUGCGCCUGGGAGGGCUUACCu -3'
miRNA:   3'- -AAGUCCACGCGGACCCUCCCGAAUGG- -5'
6660 5' -58.7 NC_001847.1 + 14141 0.74 0.310946
Target:  5'- -gCGGGgcccGCGCCUGGGcggccgcuAGGGCgacgGCCg -3'
miRNA:   3'- aaGUCCa---CGCGGACCC--------UCCCGaa--UGG- -5'
6660 5' -58.7 NC_001847.1 + 125445 0.72 0.40589
Target:  5'- -gCAGGgcGCGUCcgGGGAGGGCggGCUu -3'
miRNA:   3'- aaGUCCa-CGCGGa-CCCUCCCGaaUGG- -5'
6660 5' -58.7 NC_001847.1 + 22632 0.72 0.40589
Target:  5'- -gCAGGgcGCGUCcgGGGAGGGCggGCUu -3'
miRNA:   3'- aaGUCCa-CGCGGa-CCCUCCCGaaUGG- -5'
6660 5' -58.7 NC_001847.1 + 42995 0.71 0.459719
Target:  5'- -cCGGGaaCGCCgccGGGGGGGCgcGCCg -3'
miRNA:   3'- aaGUCCacGCGGa--CCCUCCCGaaUGG- -5'
6660 5' -58.7 NC_001847.1 + 61319 0.7 0.478491
Target:  5'- -gCGGGUGCGCg-GGGcGGGGCggGCg -3'
miRNA:   3'- aaGUCCACGCGgaCCC-UCCCGaaUGg -5'
6660 5' -58.7 NC_001847.1 + 21507 0.7 0.526961
Target:  5'- -cCGGGcGCGCCUcGGcGGGGGCcgcgcggGCCa -3'
miRNA:   3'- aaGUCCaCGCGGA-CC-CUCCCGaa-----UGG- -5'
6660 5' -58.7 NC_001847.1 + 69562 0.7 0.517109
Target:  5'- -gCGcGUGUGCCUGGG-GGGCcacgugGCCg -3'
miRNA:   3'- aaGUcCACGCGGACCCuCCCGaa----UGG- -5'
6660 5' -58.7 NC_001847.1 + 56811 0.69 0.577153
Target:  5'- -aCGGGgccggcGCGCCUGGGggcgcggggagGGGGCggcccaGCCg -3'
miRNA:   3'- aaGUCCa-----CGCGGACCC-----------UCCCGaa----UGG- -5'
6660 5' -58.7 NC_001847.1 + 108080 0.69 0.556913
Target:  5'- ---cGGUGcCGCCcGGG-GGGCUgcggGCCu -3'
miRNA:   3'- aaguCCAC-GCGGaCCCuCCCGAa---UGG- -5'
6660 5' -58.7 NC_001847.1 + 14453 0.69 0.546869
Target:  5'- --gGGGUGCGCggccgcggccuCUGGGucuccGGGCUcACCg -3'
miRNA:   3'- aagUCCACGCG-----------GACCCu----CCCGAaUGG- -5'
6660 5' -58.7 NC_001847.1 + 131740 0.69 0.536883
Target:  5'- -cCGGGcUGCucucccgcuGCUUGcGGAGGGCUUugCg -3'
miRNA:   3'- aaGUCC-ACG---------CGGAC-CCUCCCGAAugG- -5'
6660 5' -58.7 NC_001847.1 + 124914 0.68 0.617022
Target:  5'- -gCAGGcGCGCCgGGGGcgacagcGGGCgcGCCc -3'
miRNA:   3'- aaGUCCaCGCGGaCCCU-------CCCGaaUGG- -5'
6660 5' -58.7 NC_001847.1 + 125824 0.68 0.60779
Target:  5'- cUgGGGUGgGCUgGGGuGGGCUggGCUg -3'
miRNA:   3'- aAgUCCACgCGGaCCCuCCCGAa-UGG- -5'
6660 5' -58.7 NC_001847.1 + 62782 0.68 0.60779
Target:  5'- -cCGGGUcuGgGCCcGGGGGGGCgagAUCg -3'
miRNA:   3'- aaGUCCA--CgCGGaCCCUCCCGaa-UGG- -5'
6660 5' -58.7 NC_001847.1 + 45090 0.68 0.60779
Target:  5'- cUCGuGGUGCGCCgggacgggGGuGGGGGCagACa -3'
miRNA:   3'- aAGU-CCACGCGGa-------CC-CUCCCGaaUGg -5'
6660 5' -58.7 NC_001847.1 + 42609 0.68 0.597549
Target:  5'- -aCAGGgacgGCGCCgccgcgGaGGGGGGCggcagcGCCg -3'
miRNA:   3'- aaGUCCa---CGCGGa-----C-CCUCCCGaa----UGG- -5'
6660 5' -58.7 NC_001847.1 + 68064 0.68 0.587335
Target:  5'- cUCGcGGcGCGCCUGcGGcGGGGCgaacGCCg -3'
miRNA:   3'- aAGU-CCaCGCGGAC-CC-UCCCGaa--UGG- -5'
6660 5' -58.7 NC_001847.1 + 125764 0.68 0.60779
Target:  5'- cUgGGGUGgGCUgGGGuGGGCUggGCUg -3'
miRNA:   3'- aAgUCCACgCGGaCCCuCCCGAa-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.