miRNA display CGI


Results 1 - 20 of 814 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6661 5' -65 NC_001847.1 + 135068 0.69 0.330919
Target:  5'- uCCGCGCCCaucccccaccccGCccccGCCCGCCgcaaUGCACg -3'
miRNA:   3'- -GGCGCGGGc-----------CGuc--CGGGCGGa---ACGUG- -5'
6661 5' -65 NC_001847.1 + 134919 0.68 0.339551
Target:  5'- gCGCgagGCCCGGgcuCGGGCCC-CCggGCGCc -3'
miRNA:   3'- gGCG---CGGGCC---GUCCGGGcGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 134859 0.67 0.426067
Target:  5'- aCgGCGCCCGcGCGGGCUCGgCg-GCc- -3'
miRNA:   3'- -GgCGCGGGC-CGUCCGGGCgGaaCGug -5'
6661 5' -65 NC_001847.1 + 134781 0.66 0.45184
Target:  5'- gCGCGCggGGCGGGCCC-CgggGCGCg -3'
miRNA:   3'- gGCGCGggCCGUCCGGGcGgaaCGUG- -5'
6661 5' -65 NC_001847.1 + 134376 0.72 0.216642
Target:  5'- gCCgGCGCCgccggCGGCGGGCCgGCCUcGCc- -3'
miRNA:   3'- -GG-CGCGG-----GCCGUCCGGgCGGAaCGug -5'
6661 5' -65 NC_001847.1 + 134258 0.74 0.144102
Target:  5'- gCCGCGgcggcCCCGGCGcGGgCCGCCgccGCGCg -3'
miRNA:   3'- -GGCGC-----GGGCCGU-CCgGGCGGaa-CGUG- -5'
6661 5' -65 NC_001847.1 + 134006 0.67 0.426067
Target:  5'- gCCGCGCgCCG--AGGCgCCGCCgcugGUGCu -3'
miRNA:   3'- -GGCGCG-GGCcgUCCG-GGCGGaa--CGUG- -5'
6661 5' -65 NC_001847.1 + 133904 0.66 0.478444
Target:  5'- gCUGCGgCCGGUguaccuGGCCUGCgggcgGCGCg -3'
miRNA:   3'- -GGCGCgGGCCGu-----CCGGGCGgaa--CGUG- -5'
6661 5' -65 NC_001847.1 + 133751 0.7 0.266505
Target:  5'- gCCGCGCgaguaCCGGCAGcGCgUGCUgccgGCGCu -3'
miRNA:   3'- -GGCGCG-----GGCCGUC-CGgGCGGaa--CGUG- -5'
6661 5' -65 NC_001847.1 + 133723 0.66 0.46062
Target:  5'- -aGUGCCUGGCGGGCgCgggGCCgcgUGCc- -3'
miRNA:   3'- ggCGCGGGCCGUCCGgG---CGGa--ACGug -5'
6661 5' -65 NC_001847.1 + 133717 0.67 0.417671
Target:  5'- aCGCGCCU---GGGCCCGCCaccGCGg -3'
miRNA:   3'- gGCGCGGGccgUCCGGGCGGaa-CGUg -5'
6661 5' -65 NC_001847.1 + 133579 0.68 0.354298
Target:  5'- gCGCGCgCCGuGCuGGCCuCGCg--GCGCg -3'
miRNA:   3'- gGCGCG-GGC-CGuCCGG-GCGgaaCGUG- -5'
6661 5' -65 NC_001847.1 + 133547 0.68 0.354298
Target:  5'- gUGCGCCgCGcGCuGGCCCGagcgGCGCg -3'
miRNA:   3'- gGCGCGG-GC-CGuCCGGGCggaaCGUG- -5'
6661 5' -65 NC_001847.1 + 133412 0.66 0.45184
Target:  5'- uCUGCGCgCGGCuGGCC-GCg--GCGCg -3'
miRNA:   3'- -GGCGCGgGCCGuCCGGgCGgaaCGUG- -5'
6661 5' -65 NC_001847.1 + 133309 0.67 0.417671
Target:  5'- gCCGgGCgCUGGaCGGGCgCGCCggacgugaGCGCg -3'
miRNA:   3'- -GGCgCG-GGCC-GUCCGgGCGGaa------CGUG- -5'
6661 5' -65 NC_001847.1 + 133230 0.76 0.104393
Target:  5'- gCCGCGCCgCGGCGGGCUcuCGCac-GCGCu -3'
miRNA:   3'- -GGCGCGG-GCCGUCCGG--GCGgaaCGUG- -5'
6661 5' -65 NC_001847.1 + 133218 0.68 0.369491
Target:  5'- gCCGCGCgCCGGCuaaGCCuCGCCaccUGCcccGCa -3'
miRNA:   3'- -GGCGCG-GGCCGuc-CGG-GCGGa--ACG---UG- -5'
6661 5' -65 NC_001847.1 + 133164 0.66 0.443154
Target:  5'- cCCGCuGCCCGGgGaggcgcuggcGGCgCCGCCcgGCGa -3'
miRNA:   3'- -GGCG-CGGGCCgU----------CCG-GGCGGaaCGUg -5'
6661 5' -65 NC_001847.1 + 133045 0.67 0.416837
Target:  5'- aUCGCgGCCCGccgccgcGCGGGCCCcGCgggGCGCu -3'
miRNA:   3'- -GGCG-CGGGC-------CGUCCGGG-CGgaaCGUG- -5'
6661 5' -65 NC_001847.1 + 133004 0.71 0.232311
Target:  5'- -gGCGCCCGGC--GCUCGCCUUcgaccccgagGCGCu -3'
miRNA:   3'- ggCGCGGGCCGucCGGGCGGAA----------CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.