Results 1 - 20 of 814 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6661 | 5' | -65 | NC_001847.1 | + | 4 | 0.7 | 0.272585 |
Target: 5'- uCCGCGCcgcgCCGcGCGGGCCC-CCU-GCGa -3' miRNA: 3'- -GGCGCG----GGC-CGUCCGGGcGGAaCGUg -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 72 | 0.69 | 0.298019 |
Target: 5'- gCGCGgCgGGCccGGGCCCGCUcUGgGCu -3' miRNA: 3'- gGCGCgGgCCG--UCCGGGCGGaACgUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 120 | 0.67 | 0.401187 |
Target: 5'- cCCGCGcCCCGGCcccGCCCGCgg-GCc- -3' miRNA: 3'- -GGCGC-GGGCCGuc-CGGGCGgaaCGug -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 214 | 0.73 | 0.16675 |
Target: 5'- cCCgGCGCCCGG-GGGCCCgagcccggGCCUcGCGCc -3' miRNA: 3'- -GG-CGCGGGCCgUCCGGG--------CGGAaCGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 249 | 0.67 | 0.434561 |
Target: 5'- cCCGaCGCCCGGCgcccagGGGCCCGa---GCcCg -3' miRNA: 3'- -GGC-GCGGGCCG------UCCGGGCggaaCGuG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 284 | 0.72 | 0.216642 |
Target: 5'- gCCGCcgaGCCCGcGCGGGCgCCGuCCccGCGCc -3' miRNA: 3'- -GGCG---CGGGC-CGUCCG-GGC-GGaaCGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 359 | 0.76 | 0.109752 |
Target: 5'- uUCGCGCCCcg-GGGCCCGCCccGCGCg -3' miRNA: 3'- -GGCGCGGGccgUCCGGGCGGaaCGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 501 | 0.71 | 0.226984 |
Target: 5'- uCCGCGCCUGcuGCcGGCCCGCCcccagccCACg -3' miRNA: 3'- -GGCGCGGGC--CGuCCGGGCGGaac----GUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 744 | 0.71 | 0.226984 |
Target: 5'- cCCGCggGCCCcccuagggcgaGGCcGGCCCGCCgccggcgGCGCc -3' miRNA: 3'- -GGCG--CGGG-----------CCGuCCGGGCGGaa-----CGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 903 | 0.68 | 0.377252 |
Target: 5'- gCCGCGgccgCCGGCcgccGCCCGCCg-GCGCc -3' miRNA: 3'- -GGCGCg---GGCCGuc--CGGGCGGaaCGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 963 | 0.69 | 0.325255 |
Target: 5'- aCUGCGCCggcacccgggcCGGCGGGgcuUCCGCCgcggcggcgGCACg -3' miRNA: 3'- -GGCGCGG-----------GCCGUCC---GGGCGGaa-------CGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 968 | 0.73 | 0.183577 |
Target: 5'- gCUGCGCCgGGCGucuaugcgccGGCCCGCa--GCACc -3' miRNA: 3'- -GGCGCGGgCCGU----------CCGGGCGgaaCGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 1192 | 0.74 | 0.155052 |
Target: 5'- gCCGCGgCCGGCA-GCUCGUCggGCGCc -3' miRNA: 3'- -GGCGCgGGCCGUcCGGGCGGaaCGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 1345 | 0.77 | 0.085328 |
Target: 5'- gCCGCGCCCuGCGcGGCCaUGuCCUUGCGCc -3' miRNA: 3'- -GGCGCGGGcCGU-CCGG-GC-GGAACGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 1407 | 0.69 | 0.298019 |
Target: 5'- cUCGCGCggCGGCacGGGCaCCGCggUGCGCg -3' miRNA: 3'- -GGCGCGg-GCCG--UCCG-GGCGgaACGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 1426 | 0.68 | 0.354298 |
Target: 5'- cCCGCGCCCcGcCAGGCaCuaUUUGCGCu -3' miRNA: 3'- -GGCGCGGGcC-GUCCGgGcgGAACGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 1620 | 0.69 | 0.304659 |
Target: 5'- aCUGCGCCgCGGCA-GCaCCGCg--GCGCg -3' miRNA: 3'- -GGCGCGG-GCCGUcCG-GGCGgaaCGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 1765 | 0.66 | 0.451841 |
Target: 5'- aCCGCGCCgCGGaaggcCAGGuCCCGCgUcgagagcagcaGCACg -3' miRNA: 3'- -GGCGCGG-GCC-----GUCC-GGGCGgAa----------CGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 1847 | 0.69 | 0.325255 |
Target: 5'- uCCaGCGCCCGGCccAGGCgUGCgagucgGCGCu -3' miRNA: 3'- -GG-CGCGGGCCG--UCCGgGCGgaa---CGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 1897 | 0.68 | 0.346132 |
Target: 5'- cCCaGCGCCgCGaGCgcgugcgAGaGCCCGCCgcgGCGCg -3' miRNA: 3'- -GG-CGCGG-GC-CG-------UC-CGGGCGGaa-CGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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