miRNA display CGI


Results 1 - 20 of 814 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6661 5' -65 NC_001847.1 + 4 0.7 0.272585
Target:  5'- uCCGCGCcgcgCCGcGCGGGCCC-CCU-GCGa -3'
miRNA:   3'- -GGCGCG----GGC-CGUCCGGGcGGAaCGUg -5'
6661 5' -65 NC_001847.1 + 72 0.69 0.298019
Target:  5'- gCGCGgCgGGCccGGGCCCGCUcUGgGCu -3'
miRNA:   3'- gGCGCgGgCCG--UCCGGGCGGaACgUG- -5'
6661 5' -65 NC_001847.1 + 120 0.67 0.401187
Target:  5'- cCCGCGcCCCGGCcccGCCCGCgg-GCc- -3'
miRNA:   3'- -GGCGC-GGGCCGuc-CGGGCGgaaCGug -5'
6661 5' -65 NC_001847.1 + 214 0.73 0.16675
Target:  5'- cCCgGCGCCCGG-GGGCCCgagcccggGCCUcGCGCc -3'
miRNA:   3'- -GG-CGCGGGCCgUCCGGG--------CGGAaCGUG- -5'
6661 5' -65 NC_001847.1 + 249 0.67 0.434561
Target:  5'- cCCGaCGCCCGGCgcccagGGGCCCGa---GCcCg -3'
miRNA:   3'- -GGC-GCGGGCCG------UCCGGGCggaaCGuG- -5'
6661 5' -65 NC_001847.1 + 284 0.72 0.216642
Target:  5'- gCCGCcgaGCCCGcGCGGGCgCCGuCCccGCGCc -3'
miRNA:   3'- -GGCG---CGGGC-CGUCCG-GGC-GGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 359 0.76 0.109752
Target:  5'- uUCGCGCCCcg-GGGCCCGCCccGCGCg -3'
miRNA:   3'- -GGCGCGGGccgUCCGGGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 501 0.71 0.226984
Target:  5'- uCCGCGCCUGcuGCcGGCCCGCCcccagccCACg -3'
miRNA:   3'- -GGCGCGGGC--CGuCCGGGCGGaac----GUG- -5'
6661 5' -65 NC_001847.1 + 744 0.71 0.226984
Target:  5'- cCCGCggGCCCcccuagggcgaGGCcGGCCCGCCgccggcgGCGCc -3'
miRNA:   3'- -GGCG--CGGG-----------CCGuCCGGGCGGaa-----CGUG- -5'
6661 5' -65 NC_001847.1 + 903 0.68 0.377252
Target:  5'- gCCGCGgccgCCGGCcgccGCCCGCCg-GCGCc -3'
miRNA:   3'- -GGCGCg---GGCCGuc--CGGGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 963 0.69 0.325255
Target:  5'- aCUGCGCCggcacccgggcCGGCGGGgcuUCCGCCgcggcggcgGCACg -3'
miRNA:   3'- -GGCGCGG-----------GCCGUCC---GGGCGGaa-------CGUG- -5'
6661 5' -65 NC_001847.1 + 968 0.73 0.183577
Target:  5'- gCUGCGCCgGGCGucuaugcgccGGCCCGCa--GCACc -3'
miRNA:   3'- -GGCGCGGgCCGU----------CCGGGCGgaaCGUG- -5'
6661 5' -65 NC_001847.1 + 1192 0.74 0.155052
Target:  5'- gCCGCGgCCGGCA-GCUCGUCggGCGCc -3'
miRNA:   3'- -GGCGCgGGCCGUcCGGGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 1345 0.77 0.085328
Target:  5'- gCCGCGCCCuGCGcGGCCaUGuCCUUGCGCc -3'
miRNA:   3'- -GGCGCGGGcCGU-CCGG-GC-GGAACGUG- -5'
6661 5' -65 NC_001847.1 + 1407 0.69 0.298019
Target:  5'- cUCGCGCggCGGCacGGGCaCCGCggUGCGCg -3'
miRNA:   3'- -GGCGCGg-GCCG--UCCG-GGCGgaACGUG- -5'
6661 5' -65 NC_001847.1 + 1426 0.68 0.354298
Target:  5'- cCCGCGCCCcGcCAGGCaCuaUUUGCGCu -3'
miRNA:   3'- -GGCGCGGGcC-GUCCGgGcgGAACGUG- -5'
6661 5' -65 NC_001847.1 + 1620 0.69 0.304659
Target:  5'- aCUGCGCCgCGGCA-GCaCCGCg--GCGCg -3'
miRNA:   3'- -GGCGCGG-GCCGUcCG-GGCGgaaCGUG- -5'
6661 5' -65 NC_001847.1 + 1765 0.66 0.451841
Target:  5'- aCCGCGCCgCGGaaggcCAGGuCCCGCgUcgagagcagcaGCACg -3'
miRNA:   3'- -GGCGCGG-GCC-----GUCC-GGGCGgAa----------CGUG- -5'
6661 5' -65 NC_001847.1 + 1847 0.69 0.325255
Target:  5'- uCCaGCGCCCGGCccAGGCgUGCgagucgGCGCu -3'
miRNA:   3'- -GG-CGCGGGCCG--UCCGgGCGgaa---CGUG- -5'
6661 5' -65 NC_001847.1 + 1897 0.68 0.346132
Target:  5'- cCCaGCGCCgCGaGCgcgugcgAGaGCCCGCCgcgGCGCg -3'
miRNA:   3'- -GG-CGCGG-GC-CG-------UC-CGGGCGGaa-CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.