miRNA display CGI


Results 21 - 40 of 814 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6661 5' -65 NC_001847.1 + 1963 0.66 0.443154
Target:  5'- uCCuCGCCgGGC-GGCgCCGCCa-GCGCc -3'
miRNA:   3'- -GGcGCGGgCCGuCCG-GGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 1975 0.7 0.266505
Target:  5'- cCCGCGCCCGcGCAGGUa-GCag-GCAg -3'
miRNA:   3'- -GGCGCGGGC-CGUCCGggCGgaaCGUg -5'
6661 5' -65 NC_001847.1 + 2086 0.68 0.377252
Target:  5'- -aGCGCCCcGCgGGGCCCGCgcgGCGg -3'
miRNA:   3'- ggCGCGGGcCG-UCCGGGCGgaaCGUg -5'
6661 5' -65 NC_001847.1 + 2194 0.69 0.325255
Target:  5'- gCCGCGCCgcgaccucggggCGGCaguAGGCCgccagCGCCgcgGCGCu -3'
miRNA:   3'- -GGCGCGG------------GCCG---UCCGG-----GCGGaa-CGUG- -5'
6661 5' -65 NC_001847.1 + 2285 0.7 0.272585
Target:  5'- gCCGcCGUCggCGGCGGGgCCGCCgggcgGCAUg -3'
miRNA:   3'- -GGC-GCGG--GCCGUCCgGGCGGaa---CGUG- -5'
6661 5' -65 NC_001847.1 + 2401 0.73 0.162765
Target:  5'- aCGCGCUCGGCcguGGCUCGCU--GCGCc -3'
miRNA:   3'- gGCGCGGGCCGu--CCGGGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 2436 0.71 0.221762
Target:  5'- gCgGCGgCCGGCAGGgCCGCCgccuCGCc -3'
miRNA:   3'- -GgCGCgGGCCGUCCgGGCGGaac-GUG- -5'
6661 5' -65 NC_001847.1 + 2546 0.71 0.241607
Target:  5'- aCCGCuGCucuCCGGCGGGCUgucuucggcgcgggCGCCU-GCGCg -3'
miRNA:   3'- -GGCG-CG---GGCCGUCCGG--------------GCGGAaCGUG- -5'
6661 5' -65 NC_001847.1 + 2615 0.71 0.245524
Target:  5'- gCCGCGCCggaggugcuuCGGCGGGaCCGCCgucgccgcuugcgGCGCc -3'
miRNA:   3'- -GGCGCGG----------GCCGUCCgGGCGGaa-----------CGUG- -5'
6661 5' -65 NC_001847.1 + 2749 0.68 0.377252
Target:  5'- cCCG-GCCCGGCGcGGCggCGCCg-GCGCc -3'
miRNA:   3'- -GGCgCGGGCCGU-CCGg-GCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 2821 0.68 0.354298
Target:  5'- gCCGCGCcggcaccuccgCCGGCGGGCUgaacagcgcgcgCGCCa-GCGCc -3'
miRNA:   3'- -GGCGCG-----------GGCCGUCCGG------------GCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 2929 0.66 0.477545
Target:  5'- uCCGCGCCgccagcgCGGCcgccuccagcgcGGcGgCCGCCUcgGCGCg -3'
miRNA:   3'- -GGCGCGG-------GCCG------------UC-CgGGCGGAa-CGUG- -5'
6661 5' -65 NC_001847.1 + 3003 0.7 0.260535
Target:  5'- gCCGCGCgCGcuccaccgcgucGCGGGCCgCGCCgaGCAg -3'
miRNA:   3'- -GGCGCGgGC------------CGUCCGG-GCGGaaCGUg -5'
6661 5' -65 NC_001847.1 + 3045 0.66 0.478444
Target:  5'- gCGCGCCCaGCAG--CCGCag-GCGCa -3'
miRNA:   3'- gGCGCGGGcCGUCcgGGCGgaaCGUG- -5'
6661 5' -65 NC_001847.1 + 3059 0.68 0.385123
Target:  5'- aCGCGCuCCGGguG-CgCCGCCa-GCGCg -3'
miRNA:   3'- gGCGCG-GGCCguCcG-GGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 3098 0.77 0.085328
Target:  5'- gCCGCGgCCGGCAggccgcGGCCCGCCgcgGC-Cg -3'
miRNA:   3'- -GGCGCgGGCCGU------CCGGGCGGaa-CGuG- -5'
6661 5' -65 NC_001847.1 + 3137 0.71 0.221762
Target:  5'- aCCGggaGCCCGGCGGcGCCgGCg--GCGCg -3'
miRNA:   3'- -GGCg--CGGGCCGUC-CGGgCGgaaCGUG- -5'
6661 5' -65 NC_001847.1 + 3176 0.68 0.374912
Target:  5'- uCCaGCGCCucgCGGCAGGCgacggcgcagcgguCCGCCagcucGCGCa -3'
miRNA:   3'- -GG-CGCGG---GCCGUCCG--------------GGCGGaa---CGUG- -5'
6661 5' -65 NC_001847.1 + 3240 0.69 0.325255
Target:  5'- cCCGCGCCgugcucgccggCGGCAGGggCGCCggcgccGCGCg -3'
miRNA:   3'- -GGCGCGG-----------GCCGUCCggGCGGaa----CGUG- -5'
6661 5' -65 NC_001847.1 + 3515 0.66 0.495686
Target:  5'- aCGCuCCCGGUGaugaacgagcuguGGCCCcggcaGCCcUGCACg -3'
miRNA:   3'- gGCGcGGGCCGU-------------CCGGG-----CGGaACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.