miRNA display CGI


Results 21 - 40 of 814 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6661 5' -65 NC_001847.1 + 1345 0.77 0.085328
Target:  5'- gCCGCGCCCuGCGcGGCCaUGuCCUUGCGCc -3'
miRNA:   3'- -GGCGCGGGcCGU-CCGG-GC-GGAACGUG- -5'
6661 5' -65 NC_001847.1 + 65834 0.77 0.085328
Target:  5'- cCCGCGCCCaaaaGGCAgccGGUCCGCCc-GCACg -3'
miRNA:   3'- -GGCGCGGG----CCGU---CCGGGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 105911 0.77 0.085328
Target:  5'- gCCGCGgCCGGCAggccgcGGCCCGCCgcgGC-Cg -3'
miRNA:   3'- -GGCGCgGGCCGU------CCGGGCGGaa-CGuG- -5'
6661 5' -65 NC_001847.1 + 129312 0.77 0.087517
Target:  5'- -gGUGCaaGGCGGGCCUGCCggGCGCg -3'
miRNA:   3'- ggCGCGggCCGUCCGGGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 26499 0.77 0.087517
Target:  5'- -gGUGCaaGGCGGGCCUGCCggGCGCg -3'
miRNA:   3'- ggCGCGggCCGUCCGGGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 100324 0.77 0.089758
Target:  5'- uCCaGCGCCCGGUcGGCCUGCC--GCGCc -3'
miRNA:   3'- -GG-CGCGGGCCGuCCGGGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 56859 0.77 0.094406
Target:  5'- uCUGCGCCCGGC-GGCCCGg---GCGCg -3'
miRNA:   3'- -GGCGCGGGCCGuCCGGGCggaaCGUG- -5'
6661 5' -65 NC_001847.1 + 97991 0.77 0.096815
Target:  5'- gCCGCuuCCCGGCcgccccaaAGGCCCGCUgggcgUGCGCg -3'
miRNA:   3'- -GGCGc-GGGCCG--------UCCGGGCGGa----ACGUG- -5'
6661 5' -65 NC_001847.1 + 54905 0.76 0.099281
Target:  5'- gCCGuCGaCCCGGCAacguGGCCCGCgUUGaCGCa -3'
miRNA:   3'- -GGC-GC-GGGCCGU----CCGGGCGgAAC-GUG- -5'
6661 5' -65 NC_001847.1 + 98156 0.76 0.101807
Target:  5'- gCCGcCGCUCGGCgcGGGCCCGCUcgccgGCGCc -3'
miRNA:   3'- -GGC-GCGGGCCG--UCCGGGCGGaa---CGUG- -5'
6661 5' -65 NC_001847.1 + 6860 0.76 0.101807
Target:  5'- gCgGCGCuuG-CuuuGGCCCGCCUUGCGCu -3'
miRNA:   3'- -GgCGCGggCcGu--CCGGGCGGAACGUG- -5'
6661 5' -65 NC_001847.1 + 109673 0.76 0.101807
Target:  5'- gCgGCGCuuG-CuuuGGCCCGCCUUGCGCu -3'
miRNA:   3'- -GgCGCGggCcGu--CCGGGCGGAACGUG- -5'
6661 5' -65 NC_001847.1 + 30417 0.76 0.104393
Target:  5'- gCCGCGCCgCGGCGGGCUcuCGCac-GCGCu -3'
miRNA:   3'- -GGCGCGG-GCCGUCCGG--GCGgaaCGUG- -5'
6661 5' -65 NC_001847.1 + 133230 0.76 0.104393
Target:  5'- gCCGCGCCgCGGCGGGCUcuCGCac-GCGCu -3'
miRNA:   3'- -GGCGCGG-GCCGUCCGG--GCGgaaCGUG- -5'
6661 5' -65 NC_001847.1 + 77481 0.76 0.104393
Target:  5'- -gGCGCCCGGCccGGCCCGCCg-GCcCg -3'
miRNA:   3'- ggCGCGGGCCGu-CCGGGCGGaaCGuG- -5'
6661 5' -65 NC_001847.1 + 104957 0.76 0.107041
Target:  5'- gCCGCGCaccgcgUCGGcCAGGUCCGCCgaGCGCc -3'
miRNA:   3'- -GGCGCG------GGCC-GUCCGGGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 100613 0.76 0.109752
Target:  5'- -aGCGCCCGGCGGGCggcgcaUCGCCg-GCGCc -3'
miRNA:   3'- ggCGCGGGCCGUCCG------GGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 103172 0.76 0.109752
Target:  5'- uUCGCGCCCcg-GGGCCCGCCccGCGCg -3'
miRNA:   3'- -GGCGCGGGccgUCCGGGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 359 0.76 0.109752
Target:  5'- uUCGCGCCCcg-GGGCCCGCCccGCGCg -3'
miRNA:   3'- -GGCGCGGGccgUCCGGGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 112554 0.76 0.112527
Target:  5'- aCGCGaCCgGGCGGGCCCuGCCccgggGCGCc -3'
miRNA:   3'- gGCGC-GGgCCGUCCGGG-CGGaa---CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.