Results 21 - 40 of 814 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6661 | 5' | -65 | NC_001847.1 | + | 57858 | 0.66 | 0.487483 |
Target: 5'- gCGgGCCUGuCGGGUcgCCGCCgucGCACg -3' miRNA: 3'- gGCgCGGGCcGUCCG--GGCGGaa-CGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 8127 | 0.66 | 0.487483 |
Target: 5'- aCCGCGgggCgGGCGGGCCgacgaGCCUcGCGg -3' miRNA: 3'- -GGCGCg--GgCCGUCCGGg----CGGAaCGUg -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 115536 | 0.66 | 0.487483 |
Target: 5'- cCCGgGCCCGaGCucGGGCCCGgaUCgggGCGg -3' miRNA: 3'- -GGCgCGGGC-CG--UCCGGGC--GGaa-CGUg -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 43274 | 0.66 | 0.487483 |
Target: 5'- gCGCGUCCGGCGcuucGGCUU-CCUgaucGCGCa -3' miRNA: 3'- gGCGCGGGCCGU----CCGGGcGGAa---CGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 82703 | 0.66 | 0.487483 |
Target: 5'- gCGcCGCUCGcgaaGCGGGCCCGCUUcgagcucgacaGCGCg -3' miRNA: 3'- gGC-GCGGGC----CGUCCGGGCGGAa----------CGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 80333 | 0.66 | 0.487483 |
Target: 5'- aCCGUGCCCGcGCucGCCaGCgcgGCGCg -3' miRNA: 3'- -GGCGCGGGC-CGucCGGgCGgaaCGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 103351 | 0.66 | 0.487483 |
Target: 5'- aCCGCcacgGCCguaaGGCAGGCCguguugGCCggcGCGCg -3' miRNA: 3'- -GGCG----CGGg---CCGUCCGGg-----CGGaa-CGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 50267 | 0.66 | 0.486575 |
Target: 5'- aCGCGCUgGGCGcguacguGGgCCGCCUaGC-Cg -3' miRNA: 3'- gGCGCGGgCCGU-------CCgGGCGGAaCGuG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 60987 | 0.66 | 0.486575 |
Target: 5'- gCGCGCCCacGGCgccgucgAGG-CCGCCaucgGCGCc -3' miRNA: 3'- gGCGCGGG--CCG-------UCCgGGCGGaa--CGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 36449 | 0.66 | 0.484762 |
Target: 5'- gCGCGCgCGGCgcggcugugugagcGGGaCCUGCaCcUGCGCg -3' miRNA: 3'- gGCGCGgGCCG--------------UCC-GGGCG-GaACGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 27441 | 0.66 | 0.48205 |
Target: 5'- gCC-CGCCCGcgagcgccgccaaccGCAGGCgCCGUCacugacUGCACg -3' miRNA: 3'- -GGcGCGGGC---------------CGUCCG-GGCGGa-----ACGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 43795 | 0.66 | 0.478444 |
Target: 5'- gCGCGCgCCGGCGcGCCgGUCgaggGCGa -3' miRNA: 3'- gGCGCG-GGCCGUcCGGgCGGaa--CGUg -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 94167 | 0.66 | 0.478444 |
Target: 5'- gCGCgGCCCGGCGcaaccuGCUCGUCg-GCACg -3' miRNA: 3'- gGCG-CGGGCCGUc-----CGGGCGGaaCGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 58696 | 0.66 | 0.478444 |
Target: 5'- uCUGUGCCgCGGCGGaaaaGUCCGCgCgcGCGCu -3' miRNA: 3'- -GGCGCGG-GCCGUC----CGGGCG-GaaCGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 75365 | 0.66 | 0.478444 |
Target: 5'- gCGCGUCuCGGCGGGCauggGCacgGCACc -3' miRNA: 3'- gGCGCGG-GCCGUCCGgg--CGgaaCGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 131883 | 0.66 | 0.478444 |
Target: 5'- gCCGCGCggcgCCGGCGccCCUGCCgccggcgaGCACg -3' miRNA: 3'- -GGCGCG----GGCCGUccGGGCGGaa------CGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 101376 | 0.66 | 0.478444 |
Target: 5'- uUGCGCCgCGGgGGcuGCCCGCg--GCGCc -3' miRNA: 3'- gGCGCGG-GCCgUC--CGGGCGgaaCGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 113024 | 0.66 | 0.478444 |
Target: 5'- gCCGgGCCCagGGCGcGCCCGCUgu-CGCc -3' miRNA: 3'- -GGCgCGGG--CCGUcCGGGCGGaacGUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 32193 | 0.66 | 0.478444 |
Target: 5'- gCGCGCgCGGCggAGGUuaccgCgGCCUUGgACg -3' miRNA: 3'- gGCGCGgGCCG--UCCG-----GgCGGAACgUG- -5' |
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6661 | 5' | -65 | NC_001847.1 | + | 34601 | 0.66 | 0.478444 |
Target: 5'- gCCGCGgCCGGCuc-CCCGCCcaccCACu -3' miRNA: 3'- -GGCGCgGGCCGuccGGGCGGaac-GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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