miRNA display CGI


Results 21 - 40 of 814 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6661 5' -65 NC_001847.1 + 40182 0.66 0.46062
Target:  5'- gCUGCGCgCGGCGGaacGgCCGCCgaUGCGg -3'
miRNA:   3'- -GGCGCGgGCCGUC---CgGGCGGa-ACGUg -5'
6661 5' -65 NC_001847.1 + 3515 0.66 0.495686
Target:  5'- aCGCuCCCGGUGaugaacgagcuguGGCCCcggcaGCCcUGCACg -3'
miRNA:   3'- gGCGcGGGCCGU-------------CCGGG-----CGGaACGUG- -5'
6661 5' -65 NC_001847.1 + 53429 0.66 0.45184
Target:  5'- gCGCGUgccgcuuccaCCGGCGcGCgCGCCUgGCGCu -3'
miRNA:   3'- gGCGCG----------GGCCGUcCGgGCGGAaCGUG- -5'
6661 5' -65 NC_001847.1 + 88899 0.66 0.443154
Target:  5'- uCC-CGCCgGGgGcGGCUC-CCUUGCGCg -3'
miRNA:   3'- -GGcGCGGgCCgU-CCGGGcGGAACGUG- -5'
6661 5' -65 NC_001847.1 + 10125 0.66 0.469489
Target:  5'- uUCGCGgC-GaGCGGGCCCGgCCguaGCGCg -3'
miRNA:   3'- -GGCGCgGgC-CGUCCGGGC-GGaa-CGUG- -5'
6661 5' -65 NC_001847.1 + 126538 0.66 0.46062
Target:  5'- cCCGCcCCCGGCcGaGCgCCGCCccugGCGg -3'
miRNA:   3'- -GGCGcGGGCCGuC-CG-GGCGGaa--CGUg -5'
6661 5' -65 NC_001847.1 + 28009 0.66 0.46062
Target:  5'- -aGCGCgCGGCGuGCCgCGCUUacgagcgccUGCACa -3'
miRNA:   3'- ggCGCGgGCCGUcCGG-GCGGA---------ACGUG- -5'
6661 5' -65 NC_001847.1 + 47560 0.66 0.45184
Target:  5'- gCGCggggaGCCCGGC-GGCCgCGCac-GCGCc -3'
miRNA:   3'- gGCG-----CGGGCCGuCCGG-GCGgaaCGUG- -5'
6661 5' -65 NC_001847.1 + 83608 0.66 0.46062
Target:  5'- gCCGaCGCCUgGGCGccgccCCCGCCUgccgGCGCc -3'
miRNA:   3'- -GGC-GCGGG-CCGUcc---GGGCGGAa---CGUG- -5'
6661 5' -65 NC_001847.1 + 36978 0.66 0.45184
Target:  5'- -gGCGCCggCGaGCGGGCCCgcGCCgaGCGg -3'
miRNA:   3'- ggCGCGG--GC-CGUCCGGG--CGGaaCGUg -5'
6661 5' -65 NC_001847.1 + 129925 0.66 0.46062
Target:  5'- gCGCGCCCcGCcGG-CCGCCgcgGCGa -3'
miRNA:   3'- gGCGCGGGcCGuCCgGGCGGaa-CGUg -5'
6661 5' -65 NC_001847.1 + 81437 0.66 0.45184
Target:  5'- cCCGCGagccgCCGGCGGcgcGCUCGCgCgcGCACa -3'
miRNA:   3'- -GGCGCg----GGCCGUC---CGGGCG-GaaCGUG- -5'
6661 5' -65 NC_001847.1 + 134781 0.66 0.45184
Target:  5'- gCGCGCggGGCGGGCCC-CgggGCGCg -3'
miRNA:   3'- gGCGCGggCCGUCCGGGcGgaaCGUG- -5'
6661 5' -65 NC_001847.1 + 128280 0.66 0.46062
Target:  5'- -aGCGCaaGGCGGGCCaaaGCaa-GCGCc -3'
miRNA:   3'- ggCGCGggCCGUCCGGg--CGgaaCGUG- -5'
6661 5' -65 NC_001847.1 + 95014 0.66 0.46062
Target:  5'- gUGUGCUCGGCcaaGGGaCUCGUCgugGCGCg -3'
miRNA:   3'- gGCGCGGGCCG---UCC-GGGCGGaa-CGUG- -5'
6661 5' -65 NC_001847.1 + 29899 0.66 0.45184
Target:  5'- cCUGcCGCCCGaaGUGcGCCCGCCUgugcccGCGCg -3'
miRNA:   3'- -GGC-GCGGGC--CGUcCGGGCGGAa-----CGUG- -5'
6661 5' -65 NC_001847.1 + 65260 0.66 0.45184
Target:  5'- cCCGgGCCCgcGGCcGGUCCGCagcgGCGg -3'
miRNA:   3'- -GGCgCGGG--CCGuCCGGGCGgaa-CGUg -5'
6661 5' -65 NC_001847.1 + 27084 0.66 0.45184
Target:  5'- aCCGCGCCCacGCuggAGGCgUCGCCgaggucGCGCc -3'
miRNA:   3'- -GGCGCGGGc-CG---UCCG-GGCGGaa----CGUG- -5'
6661 5' -65 NC_001847.1 + 5676 0.66 0.446617
Target:  5'- gUCGCGCgCGGCGGcGgCCGCCagcucaaguagccgcUUGgACa -3'
miRNA:   3'- -GGCGCGgGCCGUC-CgGGCGG---------------AACgUG- -5'
6661 5' -65 NC_001847.1 + 133164 0.66 0.443154
Target:  5'- cCCGCuGCCCGGgGaggcgcuggcGGCgCCGCCcgGCGa -3'
miRNA:   3'- -GGCG-CGGGCCgU----------CCG-GGCGGaaCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.