miRNA display CGI


Results 41 - 60 of 814 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6661 5' -65 NC_001847.1 + 28009 0.66 0.46062
Target:  5'- -aGCGCgCGGCGuGCCgCGCUUacgagcgccUGCACa -3'
miRNA:   3'- ggCGCGgGCCGUcCGG-GCGGA---------ACGUG- -5'
6661 5' -65 NC_001847.1 + 38553 0.66 0.469489
Target:  5'- cCCGCGUuaCUGGCAGcGCCUGCUgccggaGcCGCg -3'
miRNA:   3'- -GGCGCG--GGCCGUC-CGGGCGGaa----C-GUG- -5'
6661 5' -65 NC_001847.1 + 77290 0.66 0.469489
Target:  5'- gCgGCGaCCCGaCAGGCCCGCa---CACu -3'
miRNA:   3'- -GgCGC-GGGCcGUCCGGGCGgaacGUG- -5'
6661 5' -65 NC_001847.1 + 69566 0.66 0.478444
Target:  5'- gUGUGCCUGGgGGGCCacgugGCCgugUGaCGCc -3'
miRNA:   3'- gGCGCGGGCCgUCCGGg----CGGa--AC-GUG- -5'
6661 5' -65 NC_001847.1 + 115878 0.66 0.469489
Target:  5'- gUCGCGCcgCCGGCcagaaccGGUCCGCCggaCGCg -3'
miRNA:   3'- -GGCGCG--GGCCGu------CCGGGCGGaacGUG- -5'
6661 5' -65 NC_001847.1 + 8231 0.66 0.443154
Target:  5'- gCUGCGCCaCGcGCuGGCCUGCg--GCAg -3'
miRNA:   3'- -GGCGCGG-GC-CGuCCGGGCGgaaCGUg -5'
6661 5' -65 NC_001847.1 + 118840 0.66 0.443154
Target:  5'- cCCGCGCCgCGGguGacgguauacgucGaCCCGCCggcGUACc -3'
miRNA:   3'- -GGCGCGG-GCCguC------------C-GGGCGGaa-CGUG- -5'
6661 5' -65 NC_001847.1 + 25818 0.66 0.45184
Target:  5'- gCCGCgucgGCCgGGCAGGCU-GUCU-GCAUg -3'
miRNA:   3'- -GGCG----CGGgCCGUCCGGgCGGAaCGUG- -5'
6661 5' -65 NC_001847.1 + 95014 0.66 0.46062
Target:  5'- gUGUGCUCGGCcaaGGGaCUCGUCgugGCGCg -3'
miRNA:   3'- gGCGCGGGCCG---UCC-GGGCGGaa-CGUG- -5'
6661 5' -65 NC_001847.1 + 65260 0.66 0.45184
Target:  5'- cCCGgGCCCgcGGCcGGUCCGCagcgGCGg -3'
miRNA:   3'- -GGCgCGGG--CCGuCCGGGCGgaa-CGUg -5'
6661 5' -65 NC_001847.1 + 126538 0.66 0.46062
Target:  5'- cCCGCcCCCGGCcGaGCgCCGCCccugGCGg -3'
miRNA:   3'- -GGCGcGGGCCGuC-CG-GGCGGaa--CGUg -5'
6661 5' -65 NC_001847.1 + 40182 0.66 0.46062
Target:  5'- gCUGCGCgCGGCGGaacGgCCGCCgaUGCGg -3'
miRNA:   3'- -GGCGCGgGCCGUC---CgGGCGGa-ACGUg -5'
6661 5' -65 NC_001847.1 + 46946 0.66 0.450968
Target:  5'- -gGUGUCCGGCAGcagaaagccccgcGCCCggGCCaaGCGCa -3'
miRNA:   3'- ggCGCGGGCCGUC-------------CGGG--CGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 131568 0.66 0.443154
Target:  5'- gCGgGCCCGGaccugcagcuGGCgCGCCUgcUGCAg -3'
miRNA:   3'- gGCgCGGGCCgu--------CCGgGCGGA--ACGUg -5'
6661 5' -65 NC_001847.1 + 3515 0.66 0.495686
Target:  5'- aCGCuCCCGGUGaugaacgagcuguGGCCCcggcaGCCcUGCACg -3'
miRNA:   3'- gGCGcGGGCCGU-------------CCGGG-----CGGaACGUG- -5'
6661 5' -65 NC_001847.1 + 40776 0.66 0.469489
Target:  5'- gUGCGCgCGGCAGaCgCCGCC--GCGCc -3'
miRNA:   3'- gGCGCGgGCCGUCcG-GGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 14556 0.66 0.472166
Target:  5'- aCCGCGCCgcagcgcgggugcUGGCGGGCgCgcggcucucuaaggaCGCCgucugGCGCg -3'
miRNA:   3'- -GGCGCGG-------------GCCGUCCG-G---------------GCGGaa---CGUG- -5'
6661 5' -65 NC_001847.1 + 5676 0.66 0.446617
Target:  5'- gUCGCGCgCGGCGGcGgCCGCCagcucaaguagccgcUUGgACa -3'
miRNA:   3'- -GGCGCGgGCCGUC-CgGGCGG---------------AACgUG- -5'
6661 5' -65 NC_001847.1 + 10125 0.66 0.469489
Target:  5'- uUCGCGgC-GaGCGGGCCCGgCCguaGCGCg -3'
miRNA:   3'- -GGCGCgGgC-CGUCCGGGC-GGaa-CGUG- -5'
6661 5' -65 NC_001847.1 + 132268 0.66 0.46062
Target:  5'- gCGCGgCgCGGC-GGCCCgcgcgucgGCCUggGCGCu -3'
miRNA:   3'- gGCGCgG-GCCGuCCGGG--------CGGAa-CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.