miRNA display CGI


Results 1 - 20 of 814 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6661 5' -65 NC_001847.1 + 5829 1.09 0.00039
Target:  5'- cCCGCGCCCGGCAGGCCCGCCUUGCACc -3'
miRNA:   3'- -GGCGCGGGCCGUCCGGGCGGAACGUG- -5'
6661 5' -65 NC_001847.1 + 100613 0.76 0.109752
Target:  5'- -aGCGCCCGGCGGGCggcgcaUCGCCg-GCGCc -3'
miRNA:   3'- ggCGCGGGCCGUCCG------GGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 58302 0.76 0.115368
Target:  5'- gCgGCGgCCGGCAGGCCgGCaugGCGCc -3'
miRNA:   3'- -GgCGCgGGCCGUCCGGgCGgaaCGUG- -5'
6661 5' -65 NC_001847.1 + 3515 0.66 0.495686
Target:  5'- aCGCuCCCGGUGaugaacgagcuguGGCCCcggcaGCCcUGCACg -3'
miRNA:   3'- gGCGcGGGCCGU-------------CCGGG-----CGGaACGUG- -5'
6661 5' -65 NC_001847.1 + 101619 0.79 0.061241
Target:  5'- cCCGCGCCCGGCgccuccgcggcGGcGCCCGCCgccgcccGCGCc -3'
miRNA:   3'- -GGCGCGGGCCG-----------UC-CGGGCGGaa-----CGUG- -5'
6661 5' -65 NC_001847.1 + 10552 0.78 0.073069
Target:  5'- cCCGCGCCCGGCcggcgccGGGCCCGgCgccgGCGg -3'
miRNA:   3'- -GGCGCGGGCCG-------UCCGGGCgGaa--CGUg -5'
6661 5' -65 NC_001847.1 + 3098 0.77 0.085328
Target:  5'- gCCGCGgCCGGCAggccgcGGCCCGCCgcgGC-Cg -3'
miRNA:   3'- -GGCGCgGGCCGU------CCGGGCGGaa-CGuG- -5'
6661 5' -65 NC_001847.1 + 1345 0.77 0.085328
Target:  5'- gCCGCGCCCuGCGcGGCCaUGuCCUUGCGCc -3'
miRNA:   3'- -GGCGCGGGcCGU-CCGG-GC-GGAACGUG- -5'
6661 5' -65 NC_001847.1 + 100324 0.77 0.089758
Target:  5'- uCCaGCGCCCGGUcGGCCUGCC--GCGCc -3'
miRNA:   3'- -GG-CGCGGGCCGuCCGGGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 359 0.76 0.109752
Target:  5'- uUCGCGCCCcg-GGGCCCGCCccGCGCg -3'
miRNA:   3'- -GGCGCGGGccgUCCGGGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 98156 0.76 0.101807
Target:  5'- gCCGcCGCUCGGCgcGGGCCCGCUcgccgGCGCc -3'
miRNA:   3'- -GGC-GCGGGCCG--UCCGGGCGGaa---CGUG- -5'
6661 5' -65 NC_001847.1 + 26499 0.77 0.087517
Target:  5'- -gGUGCaaGGCGGGCCUGCCggGCGCg -3'
miRNA:   3'- ggCGCGggCCGUCCGGGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 38114 0.85 0.024685
Target:  5'- gCCGCuGCCCGGCGGGUgCGCCggGCACc -3'
miRNA:   3'- -GGCG-CGGGCCGUCCGgGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 30417 0.76 0.104393
Target:  5'- gCCGCGCCgCGGCGGGCUcuCGCac-GCGCu -3'
miRNA:   3'- -GGCGCGG-GCCGUCCGG--GCGgaaCGUG- -5'
6661 5' -65 NC_001847.1 + 13933 0.8 0.056696
Target:  5'- gCCGCGCCgCGGCAGGggggCCGCCccGCGCa -3'
miRNA:   3'- -GGCGCGG-GCCGUCCg---GGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 65834 0.77 0.085328
Target:  5'- cCCGCGCCCaaaaGGCAgccGGUCCGCCc-GCACg -3'
miRNA:   3'- -GGCGCGGG----CCGU---CCGGGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 104957 0.76 0.107041
Target:  5'- gCCGCGCaccgcgUCGGcCAGGUCCGCCgaGCGCc -3'
miRNA:   3'- -GGCGCG------GGCC-GUCCGGGCGGaaCGUG- -5'
6661 5' -65 NC_001847.1 + 9741 0.76 0.112527
Target:  5'- aCGCGaCCgGGCGGGCCCuGCCccgggGCGCc -3'
miRNA:   3'- gGCGC-GGgCCGUCCGGG-CGGaa---CGUG- -5'
6661 5' -65 NC_001847.1 + 22092 0.8 0.056696
Target:  5'- gCGgGCCCGGCAGGCgCGCCggGgGCg -3'
miRNA:   3'- gGCgCGGGCCGUCCGgGCGGaaCgUG- -5'
6661 5' -65 NC_001847.1 + 56082 0.78 0.079072
Target:  5'- aCGCGCCCGGCuccGGCgCCGCgUUaaGCGCg -3'
miRNA:   3'- gGCGCGGGCCGu--CCG-GGCGgAA--CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.