Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6662 | 5' | -57.3 | NC_001847.1 | + | 168 | 0.68 | 0.699822 |
Target: 5'- gGGGUUCugc-GUCUugGCCCCCggggCCCCc -3' miRNA: 3'- gUCCGAGuaaaCGGA--UGGGGGa---GGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 5855 | 0.69 | 0.659112 |
Target: 5'- cCAGGCcCGcc--CCUACcaguuCCCCUCCCCa -3' miRNA: 3'- -GUCCGaGUaaacGGAUG-----GGGGAGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 7123 | 0.71 | 0.546869 |
Target: 5'- --aGCcCAccUUGCCggucuUGCCCCCUCCCCu -3' miRNA: 3'- gucCGaGUa-AACGG-----AUGGGGGAGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 5789 | 0.79 | 0.196263 |
Target: 5'- gGGGCUCAUUUgcaugaaagcaugGCCgaacGCCCCCggCCCCg -3' miRNA: 3'- gUCCGAGUAAA-------------CGGa---UGGGGGa-GGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 32459 | 0.67 | 0.768499 |
Target: 5'- -cGGCgc-----CCUGCCCCCgCCCCg -3' miRNA: 3'- guCCGaguaaacGGAUGGGGGaGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 75954 | 0.68 | 0.71987 |
Target: 5'- -cGGCUCGg--GCUacgacgGCCCCCUCgaCCg -3' miRNA: 3'- guCCGAGUaaaCGGa-----UGGGGGAGg-GG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 21454 | 0.69 | 0.648858 |
Target: 5'- -cGGCUCcc---CCUuCCCCCUCCCg -3' miRNA: 3'- guCCGAGuaaacGGAuGGGGGAGGGg -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 7251 | 0.79 | 0.187137 |
Target: 5'- --cGCUCAgcUUGCCUuuuuuCCCCCUCCCCc -3' miRNA: 3'- gucCGAGUa-AACGGAu----GGGGGAGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 32057 | 0.68 | 0.71987 |
Target: 5'- gCGGGCUCg---GCg-GCCCCCgggcucgggCCCCu -3' miRNA: 3'- -GUCCGAGuaaaCGgaUGGGGGa--------GGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 6186 | 1.12 | 0.001118 |
Target: 5'- cCAGGCUCAUUUGCCUACCCCCUCCCCa -3' miRNA: 3'- -GUCCGAGUAAACGGAUGGGGGAGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 66174 | 0.69 | 0.648858 |
Target: 5'- cCGGGCUgGcgccgGCC-GCCCCCUCUUCc -3' miRNA: 3'- -GUCCGAgUaaa--CGGaUGGGGGAGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 27045 | 0.68 | 0.699822 |
Target: 5'- --cGCUC----GCCgUACCCCCgUCCCCg -3' miRNA: 3'- gucCGAGuaaaCGG-AUGGGGG-AGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 87131 | 0.7 | 0.587335 |
Target: 5'- -cGGCUCGgg-GgCUACCUcugcgacaacuuCCUCCCCg -3' miRNA: 3'- guCCGAGUaaaCgGAUGGG------------GGAGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 10746 | 0.71 | 0.56701 |
Target: 5'- gGGGCggg---GCCccgcgGCCCCCUCuCCCg -3' miRNA: 3'- gUCCGaguaaaCGGa----UGGGGGAG-GGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 700 | 0.73 | 0.414586 |
Target: 5'- aCAGaCUCGUcuuuaUUGCCgccgucgcGCCCCCUCCCUc -3' miRNA: 3'- -GUCcGAGUA-----AACGGa-------UGGGGGAGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 23754 | 0.74 | 0.39731 |
Target: 5'- gGGGcCUgAUUUGCCUGUgCCCUCCCa -3' miRNA: 3'- gUCC-GAgUAAACGGAUGgGGGAGGGg -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 58738 | 0.67 | 0.787159 |
Target: 5'- gGGGUgcccccGCCgcgGCCCCCggcgCCCCc -3' miRNA: 3'- gUCCGaguaaaCGGa--UGGGGGa---GGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 16462 | 0.67 | 0.768499 |
Target: 5'- gGGGCUgCGgcccgGCCcaACCCCCgCCCUg -3' miRNA: 3'- gUCCGA-GUaaa--CGGa-UGGGGGaGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 50887 | 0.67 | 0.758981 |
Target: 5'- -cGGCguuuuUUUGuCCUcgccGCCCuCCUCCCCc -3' miRNA: 3'- guCCGagu--AAAC-GGA----UGGG-GGAGGGG- -5' |
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6662 | 5' | -57.3 | NC_001847.1 | + | 80696 | 0.68 | 0.728797 |
Target: 5'- uCGGGCUCGUcc-CCgcCCCCCUCgucucugCCCg -3' miRNA: 3'- -GUCCGAGUAaacGGauGGGGGAG-------GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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