Results 21 - 40 of 698 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6665 | 5' | -53.9 | NC_001847.1 | + | 73818 | 0.66 | 0.957442 |
Target: 5'- ---cUAGGCGCGCccgccccGCccCGCGCaCCCg -3' miRNA: 3'- guauAUUCGCGCGc------UGuaGCGCG-GGG- -5' |
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6665 | 5' | -53.9 | NC_001847.1 | + | 71166 | 0.66 | 0.957442 |
Target: 5'- ---uUGAGCGcCGCGAacaggguGUCGCGCagcgCCg -3' miRNA: 3'- guauAUUCGC-GCGCUg------UAGCGCGg---GG- -5' |
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6665 | 5' | -53.9 | NC_001847.1 | + | 129051 | 0.66 | 0.957442 |
Target: 5'- ------cGCGgGCGuC-UCGCGCCuCCg -3' miRNA: 3'- guauauuCGCgCGCuGuAGCGCGG-GG- -5' |
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6665 | 5' | -53.9 | NC_001847.1 | + | 31224 | 0.66 | 0.957442 |
Target: 5'- ----gAGGC-CGCGGCggCGCcGCCCg -3' miRNA: 3'- guauaUUCGcGCGCUGuaGCG-CGGGg -5' |
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6665 | 5' | -53.9 | NC_001847.1 | + | 102441 | 0.66 | 0.957442 |
Target: 5'- cCAUG-AAGCGCGCcgaGACG--GCGCCgCa -3' miRNA: 3'- -GUAUaUUCGCGCG---CUGUagCGCGGgG- -5' |
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6665 | 5' | -53.9 | NC_001847.1 | + | 34790 | 0.66 | 0.957442 |
Target: 5'- -----cGGCGCGCGGCuacgaccCGCGgCCg -3' miRNA: 3'- guauauUCGCGCGCUGua-----GCGCgGGg -5' |
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6665 | 5' | -53.9 | NC_001847.1 | + | 125288 | 0.66 | 0.957442 |
Target: 5'- -uUGUAGGCGUGCGucgguccacacCAggGCGCCUUg -3' miRNA: 3'- guAUAUUCGCGCGCu----------GUagCGCGGGG- -5' |
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6665 | 5' | -53.9 | NC_001847.1 | + | 13380 | 0.66 | 0.957442 |
Target: 5'- -----cGGCGCGC-ACGUCcggGCGCgCCg -3' miRNA: 3'- guauauUCGCGCGcUGUAG---CGCGgGG- -5' |
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6665 | 5' | -53.9 | NC_001847.1 | + | 35496 | 0.66 | 0.957442 |
Target: 5'- -----cGGCGCGCGuuaugcucgGCGUgCGCGCCg- -3' miRNA: 3'- guauauUCGCGCGC---------UGUA-GCGCGGgg -5' |
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6665 | 5' | -53.9 | NC_001847.1 | + | 32194 | 0.66 | 0.957442 |
Target: 5'- ------cGCGCGCGGCGgagguuacCGCGgCCUu -3' miRNA: 3'- guauauuCGCGCGCUGUa-------GCGCgGGG- -5' |
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6665 | 5' | -53.9 | NC_001847.1 | + | 131981 | 0.66 | 0.957442 |
Target: 5'- ----gAGGCGCuggagGCGGCccgcCGCGCCgCCg -3' miRNA: 3'- guauaUUCGCG-----CGCUGua--GCGCGG-GG- -5' |
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6665 | 5' | -53.9 | NC_001847.1 | + | 32713 | 0.66 | 0.957442 |
Target: 5'- -----cGGCGCGCuuCAUggaGCGCCUCu -3' miRNA: 3'- guauauUCGCGCGcuGUAg--CGCGGGG- -5' |
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6665 | 5' | -53.9 | NC_001847.1 | + | 92507 | 0.66 | 0.957059 |
Target: 5'- ----aAAGgGCaCGACGUCGgcgcugcCGCCCCc -3' miRNA: 3'- guauaUUCgCGcGCUGUAGC-------GCGGGG- -5' |
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6665 | 5' | -53.9 | NC_001847.1 | + | 60944 | 0.66 | 0.957059 |
Target: 5'- aCAU---AGCGCGCGcagaggaACGUCagguugGCGUCCCc -3' miRNA: 3'- -GUAuauUCGCGCGC-------UGUAG------CGCGGGG- -5' |
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6665 | 5' | -53.9 | NC_001847.1 | + | 35560 | 0.66 | 0.957059 |
Target: 5'- -----cGGCGCGCGACcgCgacgaggGCGCCg- -3' miRNA: 3'- guauauUCGCGCGCUGuaG-------CGCGGgg -5' |
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6665 | 5' | -53.9 | NC_001847.1 | + | 78355 | 0.66 | 0.956675 |
Target: 5'- --cGUGAGCGCGaCGAacggcgggcgggcaAUCGCGgcgcauggccgaggaCCCCg -3' miRNA: 3'- guaUAUUCGCGC-GCUg-------------UAGCGC---------------GGGG- -5' |
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6665 | 5' | -53.9 | NC_001847.1 | + | 32663 | 0.66 | 0.953514 |
Target: 5'- gGUGgacGGCGCcgGCGGCG-CGgGCCCg -3' miRNA: 3'- gUAUau-UCGCG--CGCUGUaGCgCGGGg -5' |
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6665 | 5' | -53.9 | NC_001847.1 | + | 1094 | 0.66 | 0.953514 |
Target: 5'- ----cGGGCGcCGCGGCcgCgggcgGCGCCgCCg -3' miRNA: 3'- guauaUUCGC-GCGCUGuaG-----CGCGG-GG- -5' |
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6665 | 5' | -53.9 | NC_001847.1 | + | 88710 | 0.66 | 0.953514 |
Target: 5'- ------uGCGCGCGcAgAUUGgGCCCUu -3' miRNA: 3'- guauauuCGCGCGC-UgUAGCgCGGGG- -5' |
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6665 | 5' | -53.9 | NC_001847.1 | + | 3813 | 0.66 | 0.953514 |
Target: 5'- ----cGGGCG-GCGGCggCGCGCUgCCg -3' miRNA: 3'- guauaUUCGCgCGCUGuaGCGCGG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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