miRNA display CGI


Results 21 - 40 of 698 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6665 5' -53.9 NC_001847.1 + 40971 0.66 0.957442
Target:  5'- ------cGCGCGaGGCGgcCGCGCCCa -3'
miRNA:   3'- guauauuCGCGCgCUGUa-GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 71166 0.66 0.957442
Target:  5'- ---uUGAGCGcCGCGAacaggguGUCGCGCagcgCCg -3'
miRNA:   3'- guauAUUCGC-GCGCUg------UAGCGCGg---GG- -5'
6665 5' -53.9 NC_001847.1 + 102441 0.66 0.957442
Target:  5'- cCAUG-AAGCGCGCcgaGACG--GCGCCgCa -3'
miRNA:   3'- -GUAUaUUCGCGCG---CUGUagCGCGGgG- -5'
6665 5' -53.9 NC_001847.1 + 13380 0.66 0.957442
Target:  5'- -----cGGCGCGC-ACGUCcggGCGCgCCg -3'
miRNA:   3'- guauauUCGCGCGcUGUAG---CGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 79601 0.66 0.957442
Target:  5'- ----gGGGCGCcggggGCGuuGUCGCcggucGCCCCg -3'
miRNA:   3'- guauaUUCGCG-----CGCugUAGCG-----CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 31224 0.66 0.957442
Target:  5'- ----gAGGC-CGCGGCggCGCcGCCCg -3'
miRNA:   3'- guauaUUCGcGCGCUGuaGCG-CGGGg -5'
6665 5' -53.9 NC_001847.1 + 118779 0.66 0.957442
Target:  5'- gGUGUGAGCgGCacCGGCAgccgccaGCGCCuCCa -3'
miRNA:   3'- gUAUAUUCG-CGc-GCUGUag-----CGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 36033 0.66 0.957442
Target:  5'- ---cUGAGCGgugcCGCGGCAacuuauugcUCGCagacagGCCCCa -3'
miRNA:   3'- guauAUUCGC----GCGCUGU---------AGCG------CGGGG- -5'
6665 5' -53.9 NC_001847.1 + 49598 0.66 0.957442
Target:  5'- ---cUGGGCGCaGCGGgAgcucggCGCGCgCCa -3'
miRNA:   3'- guauAUUCGCG-CGCUgUa-----GCGCGgGG- -5'
6665 5' -53.9 NC_001847.1 + 32194 0.66 0.957442
Target:  5'- ------cGCGCGCGGCGgagguuacCGCGgCCUu -3'
miRNA:   3'- guauauuCGCGCGCUGUa-------GCGCgGGG- -5'
6665 5' -53.9 NC_001847.1 + 29168 0.66 0.957442
Target:  5'- ----gAGGCGCuggagGCGGCccgcCGCGCCgCCg -3'
miRNA:   3'- guauaUUCGCG-----CGCUGua--GCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 31833 0.66 0.957442
Target:  5'- ----aGAGUGCGagGACccuacguUCGCGCgCCCg -3'
miRNA:   3'- guauaUUCGCGCg-CUGu------AGCGCG-GGG- -5'
6665 5' -53.9 NC_001847.1 + 92507 0.66 0.957059
Target:  5'- ----aAAGgGCaCGACGUCGgcgcugcCGCCCCc -3'
miRNA:   3'- guauaUUCgCGcGCUGUAGC-------GCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 60944 0.66 0.957059
Target:  5'- aCAU---AGCGCGCGcagaggaACGUCagguugGCGUCCCc -3'
miRNA:   3'- -GUAuauUCGCGCGC-------UGUAG------CGCGGGG- -5'
6665 5' -53.9 NC_001847.1 + 35560 0.66 0.957059
Target:  5'- -----cGGCGCGCGACcgCgacgaggGCGCCg- -3'
miRNA:   3'- guauauUCGCGCGCUGuaG-------CGCGGgg -5'
6665 5' -53.9 NC_001847.1 + 78355 0.66 0.956675
Target:  5'- --cGUGAGCGCGaCGAacggcgggcgggcaAUCGCGgcgcauggccgaggaCCCCg -3'
miRNA:   3'- guaUAUUCGCGC-GCUg-------------UAGCGC---------------GGGG- -5'
6665 5' -53.9 NC_001847.1 + 3813 0.66 0.953514
Target:  5'- ----cGGGCG-GCGGCggCGCGCUgCCg -3'
miRNA:   3'- guauaUUCGCgCGCUGuaGCGCGG-GG- -5'
6665 5' -53.9 NC_001847.1 + 32663 0.66 0.953514
Target:  5'- gGUGgacGGCGCcgGCGGCG-CGgGCCCg -3'
miRNA:   3'- gUAUau-UCGCG--CGCUGUaGCgCGGGg -5'
6665 5' -53.9 NC_001847.1 + 79408 0.66 0.953514
Target:  5'- ---cUGAGCGCGUacuagGACcgcCGUGCCCg -3'
miRNA:   3'- guauAUUCGCGCG-----CUGua-GCGCGGGg -5'
6665 5' -53.9 NC_001847.1 + 51982 0.66 0.953514
Target:  5'- ---cUGGGUGCGcCGGCGcaucgcggaCGCGCCCg -3'
miRNA:   3'- guauAUUCGCGC-GCUGUa--------GCGCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.