miRNA display CGI


Results 41 - 60 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 3' -57.3 NC_001847.1 + 43008 0.66 0.818906
Target:  5'- cGGGGGgGCGC-GCcGGGCC---GCCGa -3'
miRNA:   3'- -CCCCCgCGUGaCGuCUUGGaagUGGC- -5'
6666 3' -57.3 NC_001847.1 + 59502 0.66 0.818906
Target:  5'- aGGGGGUGCGCcGa--GGCCg-CACCGg -3'
miRNA:   3'- -CCCCCGCGUGaCgucUUGGaaGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 30449 0.66 0.818906
Target:  5'- cGGGGCuGCACgagGUGGGccGCUUUCugCa -3'
miRNA:   3'- cCCCCG-CGUGa--CGUCU--UGGAAGugGc -5'
6666 3' -57.3 NC_001847.1 + 73685 0.66 0.818906
Target:  5'- --cGGCGCuGCUGCGcGACCgccUCGCCGc -3'
miRNA:   3'- cccCCGCG-UGACGUcUUGGa--AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 83197 0.66 0.818906
Target:  5'- gGGGGGCGCGCaGaC-GAGCUUggGCCc -3'
miRNA:   3'- -CCCCCGCGUGaC-GuCUUGGAagUGGc -5'
6666 3' -57.3 NC_001847.1 + 30910 0.66 0.817185
Target:  5'- cGGuGaGGCGCGCgccggcggugcgGCGGAgGCCUUCGCa- -3'
miRNA:   3'- -CC-C-CCGCGUGa-----------CGUCU-UGGAAGUGgc -5'
6666 3' -57.3 NC_001847.1 + 61557 0.67 0.810236
Target:  5'- gGGGGGCuGCuugaACUGCAGcuCCgUguCCGa -3'
miRNA:   3'- -CCCCCG-CG----UGACGUCuuGGaAguGGC- -5'
6666 3' -57.3 NC_001847.1 + 90001 0.67 0.810236
Target:  5'- cGGGGCuGCACcccGCAGAaggcGCCgagcugCACCu -3'
miRNA:   3'- cCCCCG-CGUGa--CGUCU----UGGaa----GUGGc -5'
6666 3' -57.3 NC_001847.1 + 32799 0.67 0.810236
Target:  5'- cGGGGGCGgACgGCgcguuGGAGCCggacgcgGCCGu -3'
miRNA:   3'- -CCCCCGCgUGaCG-----UCUUGGaag----UGGC- -5'
6666 3' -57.3 NC_001847.1 + 90187 0.67 0.810236
Target:  5'- cGGGGC-UGCUGCGGcgcGCCgUCGCCc -3'
miRNA:   3'- cCCCCGcGUGACGUCu--UGGaAGUGGc -5'
6666 3' -57.3 NC_001847.1 + 122801 0.67 0.801406
Target:  5'- uGGGGCGCugACUcggGCAGGACCUcgauggCGCg- -3'
miRNA:   3'- cCCCCGCG--UGA---CGUCUUGGAa-----GUGgc -5'
6666 3' -57.3 NC_001847.1 + 117042 0.67 0.801406
Target:  5'- cGGGGGCuCGCcgaggagGCGGAaGCCUcgcccUCGCCu -3'
miRNA:   3'- -CCCCCGcGUGa------CGUCU-UGGA-----AGUGGc -5'
6666 3' -57.3 NC_001847.1 + 111290 0.67 0.801406
Target:  5'- cGGGGGCgGCGCUcggccggggGCGGGGCCccUUACg- -3'
miRNA:   3'- -CCCCCG-CGUGA---------CGUCUUGGa-AGUGgc -5'
6666 3' -57.3 NC_001847.1 + 63862 0.67 0.801406
Target:  5'- gGGGGGCGCAUgcgcgacgGCuGGGACg--CGCUGg -3'
miRNA:   3'- -CCCCCGCGUGa-------CG-UCUUGgaaGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 29508 0.67 0.801406
Target:  5'- cGGGcGGCGCuucgGCcGCAGAGC--UCGCCc -3'
miRNA:   3'- -CCC-CCGCG----UGaCGUCUUGgaAGUGGc -5'
6666 3' -57.3 NC_001847.1 + 8477 0.67 0.801406
Target:  5'- cGGGGGCgGCGCUcggccggggGCGGGGCCccUUACg- -3'
miRNA:   3'- -CCCCCG-CGUGA---------CGUCUUGGa-AGUGgc -5'
6666 3' -57.3 NC_001847.1 + 42381 0.67 0.801406
Target:  5'- cGGGGGgGaugaGCUcGCGGAGCCgcaugUUCGCgCGc -3'
miRNA:   3'- -CCCCCgCg---UGA-CGUCUUGG-----AAGUG-GC- -5'
6666 3' -57.3 NC_001847.1 + 127031 0.67 0.801406
Target:  5'- uGGGGccccGCGC-CUGCgcuGGcGCCgcgUCGCCGa -3'
miRNA:   3'- -CCCC----CGCGuGACG---UCuUGGa--AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 27152 0.67 0.801406
Target:  5'- gGGGGGCGCAgCcGCGGcGGCCa--GCCc -3'
miRNA:   3'- -CCCCCGCGU-GaCGUC-UUGGaagUGGc -5'
6666 3' -57.3 NC_001847.1 + 31703 0.67 0.792424
Target:  5'- cGGGGGCGgGgggagGCGcGGGCCgcgCGCCGc -3'
miRNA:   3'- -CCCCCGCgUga---CGU-CUUGGaa-GUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.