Results 21 - 40 of 208 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6666 | 3' | -57.3 | NC_001847.1 | + | 38123 | 0.66 | 0.835731 |
Target: 5'- cGGcGGGUGCGCcggGCAccGAGUCUUCGCgCGg -3' miRNA: 3'- -CC-CCCGCGUGa--CGU--CUUGGAAGUG-GC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 30542 | 0.66 | 0.835731 |
Target: 5'- -aGGGCGUGCUGCugcucucgacgcGGGACCUg-GCCu -3' miRNA: 3'- ccCCCGCGUGACG------------UCUUGGAagUGGc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 123037 | 0.66 | 0.835731 |
Target: 5'- cGGGGGC-CGCUGgaAGuacGGCCgcgggCGCCGg -3' miRNA: 3'- -CCCCCGcGUGACg-UC---UUGGaa---GUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 13878 | 0.66 | 0.835731 |
Target: 5'- gGGGGGCGC-CUuugGCcgGGAGCCcagUGCCa -3' miRNA: 3'- -CCCCCGCGuGA---CG--UCUUGGaa-GUGGc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 109200 | 0.66 | 0.835731 |
Target: 5'- gGGcGGGUGCGaucggGCAGA-CCaagCGCCGg -3' miRNA: 3'- -CC-CCCGCGUga---CGUCUuGGaa-GUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 133355 | 0.66 | 0.835731 |
Target: 5'- -aGGGCGUGCUGCugcucucgacgcGGGACCUg-GCCu -3' miRNA: 3'- ccCCCGCGUGACG------------UCUUGGAagUGGc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 118802 | 0.66 | 0.833252 |
Target: 5'- -uGGGCGCGCUGCucgccguugcggugAGcuuGCCUaCACCc -3' miRNA: 3'- ccCCCGCGUGACG--------------UCu--UGGAaGUGGc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 95345 | 0.66 | 0.827407 |
Target: 5'- aGGGGGCGCAgccaggggaGCGGGGCCaggCGgCGc -3' miRNA: 3'- -CCCCCGCGUga-------CGUCUUGGaa-GUgGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 21966 | 0.66 | 0.827407 |
Target: 5'- gGGGGGgGCuuuCgGCGGcGGCCcccUCGCCGc -3' miRNA: 3'- -CCCCCgCGu--GaCGUC-UUGGa--AGUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 124779 | 0.66 | 0.827407 |
Target: 5'- gGGGGGgGCuuuCgGCGGcGGCCcccUCGCCGc -3' miRNA: 3'- -CCCCCgCGu--GaCGUC-UUGGa--AGUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 21872 | 0.66 | 0.827407 |
Target: 5'- cGGGGGCugcggcGCGCUGCcGAgGCCga-GCCc -3' miRNA: 3'- -CCCCCG------CGUGACGuCU-UGGaagUGGc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 3985 | 0.66 | 0.827407 |
Target: 5'- cGGGGGCcggGCGC-GCGGccCCgcggggCGCCGg -3' miRNA: 3'- -CCCCCG---CGUGaCGUCuuGGaa----GUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 86393 | 0.66 | 0.827407 |
Target: 5'- cGGcGGGCGCGCgGCuGAGucauaCUgCACCGc -3' miRNA: 3'- -CC-CCCGCGUGaCGuCUUg----GAaGUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 126539 | 0.66 | 0.827407 |
Target: 5'- cGGGGCuuGCGCUGCGGcuGACgcUCGCgCGg -3' miRNA: 3'- cCCCCG--CGUGACGUC--UUGgaAGUG-GC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 122471 | 0.66 | 0.827407 |
Target: 5'- aGGGGCGUACguaaaCAGcuCCUcCACCa -3' miRNA: 3'- cCCCCGCGUGac---GUCuuGGAaGUGGc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 73190 | 0.66 | 0.827407 |
Target: 5'- cGGGcacGGCGCGCggGCAGGcuGCggUCugCGa -3' miRNA: 3'- -CCC---CCGCGUGa-CGUCU--UGgaAGugGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 35494 | 0.66 | 0.827407 |
Target: 5'- aGGcGGCGCGC-GCGGAgGCCacggcgcgCGCCGa -3' miRNA: 3'- cCC-CCGCGUGaCGUCU-UGGaa------GUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 42172 | 0.66 | 0.826564 |
Target: 5'- cGGcGGGUGCug-GCGGAaugcgagGCCUUCGCa- -3' miRNA: 3'- -CC-CCCGCGugaCGUCU-------UGGAAGUGgc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 36958 | 0.66 | 0.824874 |
Target: 5'- cGGGGGCugcggccagcgcggGCGCcgGCGagcGGGCCcgCGCCGa -3' miRNA: 3'- -CCCCCG--------------CGUGa-CGU---CUUGGaaGUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 83197 | 0.66 | 0.818906 |
Target: 5'- gGGGGGCGCGCaGaC-GAGCUUggGCCc -3' miRNA: 3'- -CCCCCGCGUGaC-GuCUUGGAagUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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