miRNA display CGI


Results 21 - 40 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 3' -57.3 NC_001847.1 + 13878 0.66 0.835731
Target:  5'- gGGGGGCGC-CUuugGCcgGGAGCCcagUGCCa -3'
miRNA:   3'- -CCCCCGCGuGA---CG--UCUUGGaa-GUGGc -5'
6666 3' -57.3 NC_001847.1 + 30542 0.66 0.835731
Target:  5'- -aGGGCGUGCUGCugcucucgacgcGGGACCUg-GCCu -3'
miRNA:   3'- ccCCCGCGUGACG------------UCUUGGAagUGGc -5'
6666 3' -57.3 NC_001847.1 + 123037 0.66 0.835731
Target:  5'- cGGGGGC-CGCUGgaAGuacGGCCgcgggCGCCGg -3'
miRNA:   3'- -CCCCCGcGUGACg-UC---UUGGaa---GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 109200 0.66 0.835731
Target:  5'- gGGcGGGUGCGaucggGCAGA-CCaagCGCCGg -3'
miRNA:   3'- -CC-CCCGCGUga---CGUCUuGGaa-GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 113650 0.66 0.835731
Target:  5'- --aGGCGCGCccgGCAaauuCCUUCGCCGu -3'
miRNA:   3'- cccCCGCGUGa--CGUcuu-GGAAGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 133355 0.66 0.835731
Target:  5'- -aGGGCGUGCUGCugcucucgacgcGGGACCUg-GCCu -3'
miRNA:   3'- ccCCCGCGUGACG------------UCUUGGAagUGGc -5'
6666 3' -57.3 NC_001847.1 + 118802 0.66 0.833252
Target:  5'- -uGGGCGCGCUGCucgccguugcggugAGcuuGCCUaCACCc -3'
miRNA:   3'- ccCCCGCGUGACG--------------UCu--UGGAaGUGGc -5'
6666 3' -57.3 NC_001847.1 + 21872 0.66 0.827407
Target:  5'- cGGGGGCugcggcGCGCUGCcGAgGCCga-GCCc -3'
miRNA:   3'- -CCCCCG------CGUGACGuCU-UGGaagUGGc -5'
6666 3' -57.3 NC_001847.1 + 95345 0.66 0.827407
Target:  5'- aGGGGGCGCAgccaggggaGCGGGGCCaggCGgCGc -3'
miRNA:   3'- -CCCCCGCGUga-------CGUCUUGGaa-GUgGC- -5'
6666 3' -57.3 NC_001847.1 + 86393 0.66 0.827407
Target:  5'- cGGcGGGCGCGCgGCuGAGucauaCUgCACCGc -3'
miRNA:   3'- -CC-CCCGCGUGaCGuCUUg----GAaGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 122471 0.66 0.827407
Target:  5'- aGGGGCGUACguaaaCAGcuCCUcCACCa -3'
miRNA:   3'- cCCCCGCGUGac---GUCuuGGAaGUGGc -5'
6666 3' -57.3 NC_001847.1 + 3985 0.66 0.827407
Target:  5'- cGGGGGCcggGCGC-GCGGccCCgcggggCGCCGg -3'
miRNA:   3'- -CCCCCG---CGUGaCGUCuuGGaa----GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 124779 0.66 0.827407
Target:  5'- gGGGGGgGCuuuCgGCGGcGGCCcccUCGCCGc -3'
miRNA:   3'- -CCCCCgCGu--GaCGUC-UUGGa--AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 73190 0.66 0.827407
Target:  5'- cGGGcacGGCGCGCggGCAGGcuGCggUCugCGa -3'
miRNA:   3'- -CCC---CCGCGUGa-CGUCU--UGgaAGugGC- -5'
6666 3' -57.3 NC_001847.1 + 21966 0.66 0.827407
Target:  5'- gGGGGGgGCuuuCgGCGGcGGCCcccUCGCCGc -3'
miRNA:   3'- -CCCCCgCGu--GaCGUC-UUGGa--AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 126539 0.66 0.827407
Target:  5'- cGGGGCuuGCGCUGCGGcuGACgcUCGCgCGg -3'
miRNA:   3'- cCCCCG--CGUGACGUC--UUGgaAGUG-GC- -5'
6666 3' -57.3 NC_001847.1 + 35494 0.66 0.827407
Target:  5'- aGGcGGCGCGC-GCGGAgGCCacggcgcgCGCCGa -3'
miRNA:   3'- cCC-CCGCGUGaCGUCU-UGGaa------GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 42172 0.66 0.826564
Target:  5'- cGGcGGGUGCug-GCGGAaugcgagGCCUUCGCa- -3'
miRNA:   3'- -CC-CCCGCGugaCGUCU-------UGGAAGUGgc -5'
6666 3' -57.3 NC_001847.1 + 36958 0.66 0.824874
Target:  5'- cGGGGGCugcggccagcgcggGCGCcgGCGagcGGGCCcgCGCCGa -3'
miRNA:   3'- -CCCCCG--------------CGUGa-CGU---CUUGGaaGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 30449 0.66 0.818906
Target:  5'- cGGGGCuGCACgagGUGGGccGCUUUCugCa -3'
miRNA:   3'- cCCCCG-CGUGa--CGUCU--UGGAAGugGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.