miRNA display CGI


Results 21 - 40 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 3' -57.3 NC_001847.1 + 14228 0.68 0.755143
Target:  5'- cGGGGGCGUGgUG-AGGGCaaaCGCCGa -3'
miRNA:   3'- -CCCCCGCGUgACgUCUUGgaaGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 14452 0.68 0.703185
Target:  5'- cGGGGUGCGCgGCcgcGGCCUcugggucuccgggcUCACCGa -3'
miRNA:   3'- cCCCCGCGUGaCGuc-UUGGA--------------AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 15108 0.74 0.404403
Target:  5'- aGGGGGCGguCgggGgAGGGCCUagGCCGc -3'
miRNA:   3'- -CCCCCGCguGa--CgUCUUGGAagUGGC- -5'
6666 3' -57.3 NC_001847.1 + 15746 0.68 0.745531
Target:  5'- uGGaGGGCGCcuaugccgacGCggGCGGcccGCUUUCGCCGg -3'
miRNA:   3'- -CC-CCCGCG----------UGa-CGUCu--UGGAAGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 16631 0.68 0.706184
Target:  5'- gGGGGGCGCGgcggcuUUGCcgucGGGGCCccgCGCCu -3'
miRNA:   3'- -CCCCCGCGU------GACG----UCUUGGaa-GUGGc -5'
6666 3' -57.3 NC_001847.1 + 17004 0.71 0.584354
Target:  5'- cGGGGacgcaGCGCGCcucGCAGAcgGCCU-CGCCGc -3'
miRNA:   3'- -CCCC-----CGCGUGa--CGUCU--UGGAaGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 19865 0.68 0.716137
Target:  5'- cGGGGGCGC-CgGCuuAGCCcgcCACCGc -3'
miRNA:   3'- -CCCCCGCGuGaCGucUUGGaa-GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 20789 0.7 0.594496
Target:  5'- gGGGGGCugcaGCAUcgcgGCGGGugCUUCGgCGg -3'
miRNA:   3'- -CCCCCG----CGUGa---CGUCUugGAAGUgGC- -5'
6666 3' -57.3 NC_001847.1 + 21762 0.68 0.745531
Target:  5'- gGGGGGC-CGCcgGCGccGGGCCcggCGCCGg -3'
miRNA:   3'- -CCCCCGcGUGa-CGU--CUUGGaa-GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 21872 0.66 0.827407
Target:  5'- cGGGGGCugcggcGCGCUGCcGAgGCCga-GCCc -3'
miRNA:   3'- -CCCCCG------CGUGACGuCU-UGGaagUGGc -5'
6666 3' -57.3 NC_001847.1 + 21966 0.66 0.827407
Target:  5'- gGGGGGgGCuuuCgGCGGcGGCCcccUCGCCGc -3'
miRNA:   3'- -CCCCCgCGu--GaCGUC-UUGGa--AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 27152 0.67 0.801406
Target:  5'- gGGGGGCGCAgCcGCGGcGGCCa--GCCc -3'
miRNA:   3'- -CCCCCGCGU-GaCGUC-UUGGaagUGGc -5'
6666 3' -57.3 NC_001847.1 + 27405 0.68 0.716137
Target:  5'- cGGGGGgGCGCUGUu--GCC---GCCGg -3'
miRNA:   3'- -CCCCCgCGUGACGucuUGGaagUGGC- -5'
6666 3' -57.3 NC_001847.1 + 27691 0.68 0.726018
Target:  5'- cGGGcugaGGCGCGCgagcgccgGCGGGccGCCcgCGCCGa -3'
miRNA:   3'- -CCC----CCGCGUGa-------CGUCU--UGGaaGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 27914 0.67 0.774036
Target:  5'- aGGGGGCggaggGCGCggaggacGCGGAcagGCCUggGCCGc -3'
miRNA:   3'- -CCCCCG-----CGUGa------CGUCU---UGGAagUGGC- -5'
6666 3' -57.3 NC_001847.1 + 28094 0.68 0.726018
Target:  5'- gGGGGGCgGCGgUGCccucggggccAGGACCgagGCCGg -3'
miRNA:   3'- -CCCCCG-CGUgACG----------UCUUGGaagUGGC- -5'
6666 3' -57.3 NC_001847.1 + 28331 0.67 0.792424
Target:  5'- cGGGcccGGCGCcCcGCGGGGCCgcgCGCCc -3'
miRNA:   3'- -CCC---CCGCGuGaCGUCUUGGaa-GUGGc -5'
6666 3' -57.3 NC_001847.1 + 28675 0.69 0.696169
Target:  5'- cGGGGaagcaguacGCgGCGCUGguGGACCUgguguacgcgCGCCGc -3'
miRNA:   3'- -CCCC---------CG-CGUGACguCUUGGAa---------GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 28882 0.66 0.84387
Target:  5'- uGGGGCGagUUGCAGAGCaCgcggcCGCCGu -3'
miRNA:   3'- cCCCCGCguGACGUCUUG-Gaa---GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 29111 0.69 0.669902
Target:  5'- cGGGcGGCGCGCgaGCGGcugcgcgagcuggcgGACCgcugCGCCGu -3'
miRNA:   3'- -CCC-CCGCGUGa-CGUC---------------UUGGaa--GUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.