miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 3' -57.3 NC_001847.1 + 2425 0.66 0.851819
Target:  5'- aGGGGCccccCGCggcggccgGCAGGGCCgccgccUCGCCGu -3'
miRNA:   3'- cCCCCGc---GUGa-------CGUCUUGGa-----AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 2622 0.7 0.635263
Target:  5'- cGGaGGUGCuucgGCGGGACCgccgUCGCCGc -3'
miRNA:   3'- cCC-CCGCGuga-CGUCUUGGa---AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 3320 0.68 0.755143
Target:  5'- -cGGGCGcCGCUGCc--GCCggCGCCGg -3'
miRNA:   3'- ccCCCGC-GUGACGucuUGGaaGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 3820 0.74 0.379234
Target:  5'- cGGcGGCGCGCUGCcGGGCCacgccUCGCCa -3'
miRNA:   3'- cCC-CCGCGUGACGuCUUGGa----AGUGGc -5'
6666 3' -57.3 NC_001847.1 + 3985 0.66 0.827407
Target:  5'- cGGGGGCcggGCGC-GCGGccCCgcggggCGCCGg -3'
miRNA:   3'- -CCCCCG---CGUGaCGUCuuGGaa----GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 4190 0.66 0.84387
Target:  5'- --cGGCGuCGCUGCAGu-CCUcgggcccaacgUCGCCGg -3'
miRNA:   3'- cccCCGC-GUGACGUCuuGGA-----------AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 4872 0.72 0.47638
Target:  5'- gGGGGGCGgcgggcaGCgGCAGGGCCcccgCGCCGc -3'
miRNA:   3'- -CCCCCGCg------UGaCGUCUUGGaa--GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 5085 0.68 0.745531
Target:  5'- -cGGGCgGCAgUGCGGcGCCUUCuCCu -3'
miRNA:   3'- ccCCCG-CGUgACGUCuUGGAAGuGGc -5'
6666 3' -57.3 NC_001847.1 + 5233 0.69 0.655662
Target:  5'- cGGGGCGCGCgcgGCAaaGGguuuGCCUgcgucUCACCu -3'
miRNA:   3'- cCCCCGCGUGa--CGU--CU----UGGA-----AGUGGc -5'
6666 3' -57.3 NC_001847.1 + 6698 0.73 0.448609
Target:  5'- -cGGGCGCGCgcGCAGGGCCgagcgCACUGu -3'
miRNA:   3'- ccCCCGCGUGa-CGUCUUGGaa---GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 7436 0.78 0.222651
Target:  5'- gGGGGGCGUACuUGCAGcGGCCcgCACCc -3'
miRNA:   3'- -CCCCCGCGUG-ACGUC-UUGGaaGUGGc -5'
6666 3' -57.3 NC_001847.1 + 7860 0.69 0.665838
Target:  5'- cGGuGGCGC-CUGCAGAGgCggcCGCCa -3'
miRNA:   3'- cCC-CCGCGuGACGUCUUgGaa-GUGGc -5'
6666 3' -57.3 NC_001847.1 + 7905 0.69 0.684081
Target:  5'- cGGGGCGCGCgGCGGccGCCgcuucuuccccCGCCGu -3'
miRNA:   3'- cCCCCGCGUGaCGUCu-UGGaa---------GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 8477 0.67 0.801406
Target:  5'- cGGGGGCgGCGCUcggccggggGCGGGGCCccUUACg- -3'
miRNA:   3'- -CCCCCG-CGUGA---------CGUCUUGGa-AGUGgc -5'
6666 3' -57.3 NC_001847.1 + 8632 0.66 0.84387
Target:  5'- gGGGGaGCGgcCGCUGCGGAcUCgggCGCCc -3'
miRNA:   3'- -CCCC-CGC--GUGACGUCUuGGaa-GUGGc -5'
6666 3' -57.3 NC_001847.1 + 8706 1.11 0.001443
Target:  5'- gGGGGGCGCACUGCAGAACCUUCACCGa -3'
miRNA:   3'- -CCCCCGCGUGACGUCUUGGAAGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 10139 0.69 0.662788
Target:  5'- uGGGaGGCGCuGCUGCAGcucucgcccgagcaGGCCggcccgcugCGCCGg -3'
miRNA:   3'- -CCC-CCGCG-UGACGUC--------------UUGGaa-------GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 12929 0.67 0.76086
Target:  5'- cGGGGGCGCGCgugucgucgUGCGGuggggcggcgGGCCggggguggcccggUCGCUGg -3'
miRNA:   3'- -CCCCCGCGUG---------ACGUC----------UUGGa------------AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 13120 0.76 0.324721
Target:  5'- cGGGGCGCGCggGCGGcGCCg-CGCCGc -3'
miRNA:   3'- cCCCCGCGUGa-CGUCuUGGaaGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 13878 0.66 0.835731
Target:  5'- gGGGGGCGC-CUuugGCcgGGAGCCcagUGCCa -3'
miRNA:   3'- -CCCCCGCGuGA---CG--UCUUGGaa-GUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.