Results 1 - 20 of 208 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6666 | 3' | -57.3 | NC_001847.1 | + | 2425 | 0.66 | 0.851819 |
Target: 5'- aGGGGCccccCGCggcggccgGCAGGGCCgccgccUCGCCGu -3' miRNA: 3'- cCCCCGc---GUGa-------CGUCUUGGa-----AGUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 2622 | 0.7 | 0.635263 |
Target: 5'- cGGaGGUGCuucgGCGGGACCgccgUCGCCGc -3' miRNA: 3'- cCC-CCGCGuga-CGUCUUGGa---AGUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 3320 | 0.68 | 0.755143 |
Target: 5'- -cGGGCGcCGCUGCc--GCCggCGCCGg -3' miRNA: 3'- ccCCCGC-GUGACGucuUGGaaGUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 3820 | 0.74 | 0.379234 |
Target: 5'- cGGcGGCGCGCUGCcGGGCCacgccUCGCCa -3' miRNA: 3'- cCC-CCGCGUGACGuCUUGGa----AGUGGc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 3985 | 0.66 | 0.827407 |
Target: 5'- cGGGGGCcggGCGC-GCGGccCCgcggggCGCCGg -3' miRNA: 3'- -CCCCCG---CGUGaCGUCuuGGaa----GUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 4190 | 0.66 | 0.84387 |
Target: 5'- --cGGCGuCGCUGCAGu-CCUcgggcccaacgUCGCCGg -3' miRNA: 3'- cccCCGC-GUGACGUCuuGGA-----------AGUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 4872 | 0.72 | 0.47638 |
Target: 5'- gGGGGGCGgcgggcaGCgGCAGGGCCcccgCGCCGc -3' miRNA: 3'- -CCCCCGCg------UGaCGUCUUGGaa--GUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 5085 | 0.68 | 0.745531 |
Target: 5'- -cGGGCgGCAgUGCGGcGCCUUCuCCu -3' miRNA: 3'- ccCCCG-CGUgACGUCuUGGAAGuGGc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 5233 | 0.69 | 0.655662 |
Target: 5'- cGGGGCGCGCgcgGCAaaGGguuuGCCUgcgucUCACCu -3' miRNA: 3'- cCCCCGCGUGa--CGU--CU----UGGA-----AGUGGc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 6698 | 0.73 | 0.448609 |
Target: 5'- -cGGGCGCGCgcGCAGGGCCgagcgCACUGu -3' miRNA: 3'- ccCCCGCGUGa-CGUCUUGGaa---GUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 7436 | 0.78 | 0.222651 |
Target: 5'- gGGGGGCGUACuUGCAGcGGCCcgCACCc -3' miRNA: 3'- -CCCCCGCGUG-ACGUC-UUGGaaGUGGc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 7860 | 0.69 | 0.665838 |
Target: 5'- cGGuGGCGC-CUGCAGAGgCggcCGCCa -3' miRNA: 3'- cCC-CCGCGuGACGUCUUgGaa-GUGGc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 7905 | 0.69 | 0.684081 |
Target: 5'- cGGGGCGCGCgGCGGccGCCgcuucuuccccCGCCGu -3' miRNA: 3'- cCCCCGCGUGaCGUCu-UGGaa---------GUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 8477 | 0.67 | 0.801406 |
Target: 5'- cGGGGGCgGCGCUcggccggggGCGGGGCCccUUACg- -3' miRNA: 3'- -CCCCCG-CGUGA---------CGUCUUGGa-AGUGgc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 8632 | 0.66 | 0.84387 |
Target: 5'- gGGGGaGCGgcCGCUGCGGAcUCgggCGCCc -3' miRNA: 3'- -CCCC-CGC--GUGACGUCUuGGaa-GUGGc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 8706 | 1.11 | 0.001443 |
Target: 5'- gGGGGGCGCACUGCAGAACCUUCACCGa -3' miRNA: 3'- -CCCCCGCGUGACGUCUUGGAAGUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 10139 | 0.69 | 0.662788 |
Target: 5'- uGGGaGGCGCuGCUGCAGcucucgcccgagcaGGCCggcccgcugCGCCGg -3' miRNA: 3'- -CCC-CCGCG-UGACGUC--------------UUGGaa-------GUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 12929 | 0.67 | 0.76086 |
Target: 5'- cGGGGGCGCGCgugucgucgUGCGGuggggcggcgGGCCggggguggcccggUCGCUGg -3' miRNA: 3'- -CCCCCGCGUG---------ACGUC----------UUGGa------------AGUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 13120 | 0.76 | 0.324721 |
Target: 5'- cGGGGCGCGCggGCGGcGCCg-CGCCGc -3' miRNA: 3'- cCCCCGCGUGa-CGUCuUGGaaGUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 13878 | 0.66 | 0.835731 |
Target: 5'- gGGGGGCGC-CUuugGCcgGGAGCCcagUGCCa -3' miRNA: 3'- -CCCCCGCGuGA---CG--UCUUGGaa-GUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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