miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 3' -57.3 NC_001847.1 + 118802 0.66 0.833252
Target:  5'- -uGGGCGCGCUGCucgccguugcggugAGcuuGCCUaCACCc -3'
miRNA:   3'- ccCCCGCGUGACG--------------UCu--UGGAaGUGGc -5'
6666 3' -57.3 NC_001847.1 + 33906 0.66 0.843065
Target:  5'- cGGGcGUGCAggaccgcCUGUGGcAGCCUUCgGCCGg -3'
miRNA:   3'- cCCC-CGCGU-------GACGUC-UUGGAAG-UGGC- -5'
6666 3' -57.3 NC_001847.1 + 116142 0.66 0.851819
Target:  5'- uGGGGCGCGCgGCccgAGGcgcuggcgGCCgcgggCGCCGc -3'
miRNA:   3'- cCCCCGCGUGaCG---UCU--------UGGaa---GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 36958 0.66 0.824874
Target:  5'- cGGGGGCugcggccagcgcggGCGCcgGCGagcGGGCCcgCGCCGa -3'
miRNA:   3'- -CCCCCG--------------CGUGa-CGU---CUUGGaaGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 21872 0.66 0.827407
Target:  5'- cGGGGGCugcggcGCGCUGCcGAgGCCga-GCCc -3'
miRNA:   3'- -CCCCCG------CGUGACGuCU-UGGaagUGGc -5'
6666 3' -57.3 NC_001847.1 + 81689 0.66 0.841448
Target:  5'- cGGGcgagugcucgcugcGCGCGCUGCGGcACgCgcgCGCCGa -3'
miRNA:   3'- cCCC--------------CGCGUGACGUCuUG-Gaa-GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 101084 0.66 0.843065
Target:  5'- cGGGGGCcgggucgGCGggGCGGGcgggcGCgUUCGCCGu -3'
miRNA:   3'- -CCCCCG-------CGUgaCGUCU-----UGgAAGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 133355 0.66 0.835731
Target:  5'- -aGGGCGUGCUGCugcucucgacgcGGGACCUg-GCCu -3'
miRNA:   3'- ccCCCGCGUGACG------------UCUUGGAagUGGc -5'
6666 3' -57.3 NC_001847.1 + 46454 0.66 0.818906
Target:  5'- uGGGGauGCGCGC-GCGGAugGCCUUgCGCa- -3'
miRNA:   3'- -CCCC--CGCGUGaCGUCU--UGGAA-GUGgc -5'
6666 3' -57.3 NC_001847.1 + 73685 0.66 0.818906
Target:  5'- --cGGCGCuGCUGCGcGACCgccUCGCCGc -3'
miRNA:   3'- cccCCGCG-UGACGUcUUGGa--AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 43008 0.66 0.818906
Target:  5'- cGGGGGgGCGC-GCcGGGCC---GCCGa -3'
miRNA:   3'- -CCCCCgCGUGaCGuCUUGGaagUGGC- -5'
6666 3' -57.3 NC_001847.1 + 30449 0.66 0.818906
Target:  5'- cGGGGCuGCACgagGUGGGccGCUUUCugCa -3'
miRNA:   3'- cCCCCG-CGUGa--CGUCU--UGGAAGugGc -5'
6666 3' -57.3 NC_001847.1 + 30910 0.66 0.817185
Target:  5'- cGGuGaGGCGCGCgccggcggugcgGCGGAgGCCUUCGCa- -3'
miRNA:   3'- -CC-C-CCGCGUGa-----------CGUCU-UGGAAGUGgc -5'
6666 3' -57.3 NC_001847.1 + 28882 0.66 0.84387
Target:  5'- uGGGGCGagUUGCAGAGCaCgcggcCGCCGu -3'
miRNA:   3'- cCCCCGCguGACGUCUUG-Gaa---GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 124779 0.66 0.827407
Target:  5'- gGGGGGgGCuuuCgGCGGcGGCCcccUCGCCGc -3'
miRNA:   3'- -CCCCCgCGu--GaCGUC-UUGGa--AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 83197 0.66 0.818906
Target:  5'- gGGGGGCGCGCaGaC-GAGCUUggGCCc -3'
miRNA:   3'- -CCCCCGCGUGaC-GuCUUGGAagUGGc -5'
6666 3' -57.3 NC_001847.1 + 8632 0.66 0.84387
Target:  5'- gGGGGaGCGgcCGCUGCGGAcUCgggCGCCc -3'
miRNA:   3'- -CCCC-CGC--GUGACGUCUuGGaa-GUGGc -5'
6666 3' -57.3 NC_001847.1 + 73190 0.66 0.827407
Target:  5'- cGGGcacGGCGCGCggGCAGGcuGCggUCugCGa -3'
miRNA:   3'- -CCC---CCGCGUGa-CGUCU--UGgaAGugGC- -5'
6666 3' -57.3 NC_001847.1 + 59502 0.66 0.818906
Target:  5'- aGGGGGUGCGCcGa--GGCCg-CACCGg -3'
miRNA:   3'- -CCCCCGCGUGaCgucUUGGaaGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 35494 0.66 0.827407
Target:  5'- aGGcGGCGCGC-GCGGAgGCCacggcgcgCGCCGa -3'
miRNA:   3'- cCC-CCGCGUGaCGUCU-UGGaa------GUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.