Results 1 - 20 of 208 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6666 | 3' | -57.3 | NC_001847.1 | + | 30910 | 0.66 | 0.817185 |
Target: 5'- cGGuGaGGCGCGCgccggcggugcgGCGGAgGCCUUCGCa- -3' miRNA: 3'- -CC-C-CCGCGUGa-----------CGUCU-UGGAAGUGgc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 28882 | 0.66 | 0.84387 |
Target: 5'- uGGGGCGagUUGCAGAGCaCgcggcCGCCGu -3' miRNA: 3'- cCCCCGCguGACGUCUUG-Gaa---GUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 30449 | 0.66 | 0.818906 |
Target: 5'- cGGGGCuGCACgagGUGGGccGCUUUCugCa -3' miRNA: 3'- cCCCCG-CGUGa--CGUCU--UGGAAGugGc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 8632 | 0.66 | 0.84387 |
Target: 5'- gGGGGaGCGgcCGCUGCGGAcUCgggCGCCc -3' miRNA: 3'- -CCCC-CGC--GUGACGUCUuGGaa-GUGGc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 118802 | 0.66 | 0.833252 |
Target: 5'- -uGGGCGCGCUGCucgccguugcggugAGcuuGCCUaCACCc -3' miRNA: 3'- ccCCCGCGUGACG--------------UCu--UGGAaGUGGc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 133355 | 0.66 | 0.835731 |
Target: 5'- -aGGGCGUGCUGCugcucucgacgcGGGACCUg-GCCu -3' miRNA: 3'- ccCCCGCGUGACG------------UCUUGGAagUGGc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 73685 | 0.66 | 0.818906 |
Target: 5'- --cGGCGCuGCUGCGcGACCgccUCGCCGc -3' miRNA: 3'- cccCCGCG-UGACGUcUUGGa--AGUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 35494 | 0.66 | 0.827407 |
Target: 5'- aGGcGGCGCGC-GCGGAgGCCacggcgcgCGCCGa -3' miRNA: 3'- cCC-CCGCGUGaCGUCU-UGGaa------GUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 116142 | 0.66 | 0.851819 |
Target: 5'- uGGGGCGCGCgGCccgAGGcgcuggcgGCCgcgggCGCCGc -3' miRNA: 3'- cCCCCGCGUGaCG---UCU--------UGGaa---GUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 33906 | 0.66 | 0.843065 |
Target: 5'- cGGGcGUGCAggaccgcCUGUGGcAGCCUUCgGCCGg -3' miRNA: 3'- cCCC-CGCGU-------GACGUC-UUGGAAG-UGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 46454 | 0.66 | 0.818906 |
Target: 5'- uGGGGauGCGCGC-GCGGAugGCCUUgCGCa- -3' miRNA: 3'- -CCCC--CGCGUGaCGUCU--UGGAA-GUGgc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 73190 | 0.66 | 0.827407 |
Target: 5'- cGGGcacGGCGCGCggGCAGGcuGCggUCugCGa -3' miRNA: 3'- -CCC---CCGCGUGa-CGUCU--UGgaAGugGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 81689 | 0.66 | 0.841448 |
Target: 5'- cGGGcgagugcucgcugcGCGCGCUGCGGcACgCgcgCGCCGa -3' miRNA: 3'- cCCC--------------CGCGUGACGUCuUG-Gaa-GUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 36958 | 0.66 | 0.824874 |
Target: 5'- cGGGGGCugcggccagcgcggGCGCcgGCGagcGGGCCcgCGCCGa -3' miRNA: 3'- -CCCCCG--------------CGUGa-CGU---CUUGGaaGUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 59502 | 0.66 | 0.818906 |
Target: 5'- aGGGGGUGCGCcGa--GGCCg-CACCGg -3' miRNA: 3'- -CCCCCGCGUGaCgucUUGGaaGUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 83197 | 0.66 | 0.818906 |
Target: 5'- gGGGGGCGCGCaGaC-GAGCUUggGCCc -3' miRNA: 3'- -CCCCCGCGUGaC-GuCUUGGAagUGGc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 101084 | 0.66 | 0.843065 |
Target: 5'- cGGGGGCcgggucgGCGggGCGGGcgggcGCgUUCGCCGu -3' miRNA: 3'- -CCCCCG-------CGUgaCGUCU-----UGgAAGUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 124779 | 0.66 | 0.827407 |
Target: 5'- gGGGGGgGCuuuCgGCGGcGGCCcccUCGCCGc -3' miRNA: 3'- -CCCCCgCGu--GaCGUC-UUGGa--AGUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 21872 | 0.66 | 0.827407 |
Target: 5'- cGGGGGCugcggcGCGCUGCcGAgGCCga-GCCc -3' miRNA: 3'- -CCCCCG------CGUGACGuCU-UGGaagUGGc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 83321 | 0.66 | 0.84387 |
Target: 5'- cGGGGGCGCuugGC---GCCUcCAUCGa -3' miRNA: 3'- -CCCCCGCGugaCGucuUGGAaGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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