Results 1 - 20 of 208 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6666 | 3' | -57.3 | NC_001847.1 | + | 110249 | 0.78 | 0.222651 |
Target: 5'- gGGGGGCGUACuUGCAGcGGCCcgCACCc -3' miRNA: 3'- -CCCCCGCGUG-ACGUC-UUGGaaGUGGc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 87988 | 0.71 | 0.584354 |
Target: 5'- cGGGGCccgGCUGCAGAagagcacgcaaACCUUC-CCGg -3' miRNA: 3'- cCCCCGcg-UGACGUCU-----------UGGAAGuGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 70373 | 0.71 | 0.574247 |
Target: 5'- aGGGGGCGC-CgggGCGcGAGCUcgCGCUGg -3' miRNA: 3'- -CCCCCGCGuGa--CGU-CUUGGaaGUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 62450 | 0.71 | 0.563177 |
Target: 5'- cGGGcGGC-CGCUcuccccggccucaGCAGGGCCggggUCGCCGg -3' miRNA: 3'- -CCC-CCGcGUGA-------------CGUCUUGGa---AGUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 81346 | 0.71 | 0.558163 |
Target: 5'- aGGGGGCGCagaccuccucgcggcGgCUGCGGugcuGCCgcccUCGCCGc -3' miRNA: 3'- -CCCCCGCG---------------U-GACGUCu---UGGa---AGUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 83270 | 0.71 | 0.544196 |
Target: 5'- cGGGGGCGgGC-GCAGAGgCgcaCACCu -3' miRNA: 3'- -CCCCCGCgUGaCGUCUUgGaa-GUGGc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 78982 | 0.71 | 0.544196 |
Target: 5'- cGGGGGCGUgcucgggcgGCUGCuGAGCCacC-CCGg -3' miRNA: 3'- -CCCCCGCG---------UGACGuCUUGGaaGuGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 101481 | 0.71 | 0.544196 |
Target: 5'- aGGGcGGCGCGCUaGCG--ACCgaggCGCCGg -3' miRNA: 3'- -CCC-CCGCGUGA-CGUcuUGGaa--GUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 43242 | 0.72 | 0.504978 |
Target: 5'- uGGGGGCGCGCggGCGGcGCgg-CGCCc -3' miRNA: 3'- -CCCCCGCGUGa-CGUCuUGgaaGUGGc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 66071 | 0.72 | 0.482037 |
Target: 5'- cGGGGGCGacgcgggcuuugaGCUGCuGGauGCCUucUCGCCGu -3' miRNA: 3'- -CCCCCGCg------------UGACGuCU--UGGA--AGUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 107685 | 0.72 | 0.47638 |
Target: 5'- gGGGGGCGgcgggcaGCgGCAGGGCCcccgCGCCGc -3' miRNA: 3'- -CCCCCGCg------UGaCGUCUUGGaa--GUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 52989 | 0.73 | 0.467026 |
Target: 5'- aGGGGGaCGCGCaggcaugGCGGAGCCgaCAgCGg -3' miRNA: 3'- -CCCCC-GCGUGa------CGUCUUGGaaGUgGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 6698 | 0.73 | 0.448609 |
Target: 5'- -cGGGCGCGCgcGCAGGGCCgagcgCACUGu -3' miRNA: 3'- ccCCCGCGUGa-CGUCUUGGaa---GUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 82357 | 0.73 | 0.439553 |
Target: 5'- -aGGGCGCACUGCAcauGAGCgcgCGCCGc -3' miRNA: 3'- ccCCCGCGUGACGU---CUUGgaaGUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 106633 | 0.74 | 0.379234 |
Target: 5'- cGGcGGCGCGCUGCcGGGCCacgccUCGCCa -3' miRNA: 3'- cCC-CCGCGUGACGuCUUGGa----AGUGGc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 13120 | 0.76 | 0.324721 |
Target: 5'- cGGGGCGCGCggGCGGcGCCg-CGCCGc -3' miRNA: 3'- cCCCCGCGUGa-CGUCuUGGaaGUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 40177 | 0.76 | 0.310255 |
Target: 5'- cGGGGGCuGCGCgcgGCGGAACggcCGCCGa -3' miRNA: 3'- -CCCCCG-CGUGa--CGUCUUGgaaGUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 68213 | 0.77 | 0.269822 |
Target: 5'- aGGGGGCGCACgggccgcgGCGGGGCCgcaagCACg- -3' miRNA: 3'- -CCCCCGCGUGa-------CGUCUUGGaa---GUGgc -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 117576 | 0.78 | 0.222651 |
Target: 5'- gGGGGGCGCGCUGCccGGCCaaaacgucugCGCCGg -3' miRNA: 3'- -CCCCCGCGUGACGucUUGGaa--------GUGGC- -5' |
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6666 | 3' | -57.3 | NC_001847.1 | + | 111519 | 1.11 | 0.001443 |
Target: 5'- gGGGGGCGCACUGCAGAACCUUCACCGa -3' miRNA: 3'- -CCCCCGCGUGACGUCUUGGAAGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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