miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 3' -57.3 NC_001847.1 + 17004 0.71 0.584354
Target:  5'- cGGGGacgcaGCGCGCcucGCAGAcgGCCU-CGCCGc -3'
miRNA:   3'- -CCCC-----CGCGUGa--CGUCU--UGGAaGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 43242 0.72 0.504978
Target:  5'- uGGGGGCGCGCggGCGGcGCgg-CGCCc -3'
miRNA:   3'- -CCCCCGCGUGa-CGUCuUGgaaGUGGc -5'
6666 3' -57.3 NC_001847.1 + 101481 0.71 0.544196
Target:  5'- aGGGcGGCGCGCUaGCG--ACCgaggCGCCGg -3'
miRNA:   3'- -CCC-CCGCGUGA-CGUcuUGGaa--GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 78982 0.71 0.544196
Target:  5'- cGGGGGCGUgcucgggcgGCUGCuGAGCCacC-CCGg -3'
miRNA:   3'- -CCCCCGCG---------UGACGuCUUGGaaGuGGC- -5'
6666 3' -57.3 NC_001847.1 + 83270 0.71 0.544196
Target:  5'- cGGGGGCGgGC-GCAGAGgCgcaCACCu -3'
miRNA:   3'- -CCCCCGCgUGaCGUCUUgGaa-GUGGc -5'
6666 3' -57.3 NC_001847.1 + 81346 0.71 0.558163
Target:  5'- aGGGGGCGCagaccuccucgcggcGgCUGCGGugcuGCCgcccUCGCCGc -3'
miRNA:   3'- -CCCCCGCG---------------U-GACGUCu---UGGa---AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 62450 0.71 0.563177
Target:  5'- cGGGcGGC-CGCUcuccccggccucaGCAGGGCCggggUCGCCGg -3'
miRNA:   3'- -CCC-CCGcGUGA-------------CGUCUUGGa---AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 70373 0.71 0.574247
Target:  5'- aGGGGGCGC-CgggGCGcGAGCUcgCGCUGg -3'
miRNA:   3'- -CCCCCGCGuGa--CGU-CUUGGaaGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 87988 0.71 0.584354
Target:  5'- cGGGGCccgGCUGCAGAagagcacgcaaACCUUC-CCGg -3'
miRNA:   3'- cCCCCGcg-UGACGUCU-----------UGGAAGuGGC- -5'
6666 3' -57.3 NC_001847.1 + 66071 0.72 0.482037
Target:  5'- cGGGGGCGacgcgggcuuugaGCUGCuGGauGCCUucUCGCCGu -3'
miRNA:   3'- -CCCCCGCg------------UGACGuCU--UGGA--AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 107685 0.72 0.47638
Target:  5'- gGGGGGCGgcgggcaGCgGCAGGGCCcccgCGCCGc -3'
miRNA:   3'- -CCCCCGCg------UGaCGUCUUGGaa--GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 52989 0.73 0.467026
Target:  5'- aGGGGGaCGCGCaggcaugGCGGAGCCgaCAgCGg -3'
miRNA:   3'- -CCCCC-GCGUGa------CGUCUUGGaaGUgGC- -5'
6666 3' -57.3 NC_001847.1 + 110249 0.78 0.222651
Target:  5'- gGGGGGCGUACuUGCAGcGGCCcgCACCc -3'
miRNA:   3'- -CCCCCGCGUG-ACGUC-UUGGaaGUGGc -5'
6666 3' -57.3 NC_001847.1 + 117576 0.78 0.222651
Target:  5'- gGGGGGCGCGCUGCccGGCCaaaacgucugCGCCGg -3'
miRNA:   3'- -CCCCCGCGUGACGucUUGGaa--------GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 68213 0.77 0.269822
Target:  5'- aGGGGGCGCACgggccgcgGCGGGGCCgcaagCACg- -3'
miRNA:   3'- -CCCCCGCGUGa-------CGUCUUGGaa---GUGgc -5'
6666 3' -57.3 NC_001847.1 + 40177 0.76 0.310255
Target:  5'- cGGGGGCuGCGCgcgGCGGAACggcCGCCGa -3'
miRNA:   3'- -CCCCCG-CGUGa--CGUCUUGgaaGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 13120 0.76 0.324721
Target:  5'- cGGGGCGCGCggGCGGcGCCg-CGCCGc -3'
miRNA:   3'- cCCCCGCGUGa-CGUCuUGGaaGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 106633 0.74 0.379234
Target:  5'- cGGcGGCGCGCUGCcGGGCCacgccUCGCCa -3'
miRNA:   3'- cCC-CCGCGUGACGuCUUGGa----AGUGGc -5'
6666 3' -57.3 NC_001847.1 + 82357 0.73 0.439553
Target:  5'- -aGGGCGCACUGCAcauGAGCgcgCGCCGc -3'
miRNA:   3'- ccCCCGCGUGACGU---CUUGgaaGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 6698 0.73 0.448609
Target:  5'- -cGGGCGCGCgcGCAGGGCCgagcgCACUGu -3'
miRNA:   3'- ccCCCGCGUGa-CGUCUUGGaa---GUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.