miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 3' -57.3 NC_001847.1 + 8706 1.11 0.001443
Target:  5'- gGGGGGCGCACUGCAGAACCUUCACCGa -3'
miRNA:   3'- -CCCCCGCGUGACGUCUUGGAAGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 134544 0.71 0.564181
Target:  5'- cGGGGCGCGuCgucggGCAGGacacaaagacgGCCUcgUCGCCGc -3'
miRNA:   3'- cCCCCGCGU-Ga----CGUCU-----------UGGA--AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 79634 0.71 0.574247
Target:  5'- cGGcGGGCGCcgccaGCaGCAGGGCCcacgUCGCCc -3'
miRNA:   3'- -CC-CCCGCG-----UGaCGUCUUGGa---AGUGGc -5'
6666 3' -57.3 NC_001847.1 + 116142 0.66 0.851819
Target:  5'- uGGGGCGCGCgGCccgAGGcgcuggcgGCCgcgggCGCCGc -3'
miRNA:   3'- cCCCCGCGUGaCG---UCU--------UGGaa---GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 3820 0.74 0.379234
Target:  5'- cGGcGGCGCGCUGCcGGGCCacgccUCGCCa -3'
miRNA:   3'- cCC-CCGCGUGACGuCUUGGa----AGUGGc -5'
6666 3' -57.3 NC_001847.1 + 15108 0.74 0.404403
Target:  5'- aGGGGGCGguCgggGgAGGGCCUagGCCGc -3'
miRNA:   3'- -CCCCCGCguGa--CgUCUUGGAagUGGC- -5'
6666 3' -57.3 NC_001847.1 + 48080 0.73 0.439553
Target:  5'- cGGGGGCGCACgccgcGCGGAAgCUgCAgCa -3'
miRNA:   3'- -CCCCCGCGUGa----CGUCUUgGAaGUgGc -5'
6666 3' -57.3 NC_001847.1 + 4872 0.72 0.47638
Target:  5'- gGGGGGCGgcgggcaGCgGCAGGGCCcccgCGCCGc -3'
miRNA:   3'- -CCCCCGCg------UGaCGUCUUGGaa--GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 96811 0.72 0.524447
Target:  5'- gGGGGGCGCGCagcgGCGGcGACCg-CGCgGg -3'
miRNA:   3'- -CCCCCGCGUGa---CGUC-UUGGaaGUGgC- -5'
6666 3' -57.3 NC_001847.1 + 125383 0.71 0.564181
Target:  5'- gGGGGGCGCGCgaggucgaGguGGACCgaCGgCGa -3'
miRNA:   3'- -CCCCCGCGUGa-------CguCUUGGaaGUgGC- -5'
6666 3' -57.3 NC_001847.1 + 103490 0.71 0.534289
Target:  5'- cGGGGCGCGCggGCuccGGGCC--CGCCGa -3'
miRNA:   3'- cCCCCGCGUGa-CGu--CUUGGaaGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 61266 0.72 0.504978
Target:  5'- cGGGGCGC-CgGCGGAACUgacgCGCCc -3'
miRNA:   3'- cCCCCGCGuGaCGUCUUGGaa--GUGGc -5'
6666 3' -57.3 NC_001847.1 + 7436 0.78 0.222651
Target:  5'- gGGGGGCGUACuUGCAGcGGCCcgCACCc -3'
miRNA:   3'- -CCCCCGCGUG-ACGUC-UUGGaaGUGGc -5'
6666 3' -57.3 NC_001847.1 + 42009 0.71 0.544196
Target:  5'- gGGGGGCGC-CgGCAGcccGGCCagcUUCGCCc -3'
miRNA:   3'- -CCCCCGCGuGaCGUC---UUGG---AAGUGGc -5'
6666 3' -57.3 NC_001847.1 + 60385 0.75 0.339682
Target:  5'- aGGGGGCGCGC-GCcGAccgcgucucccaGCCgggUCGCCGa -3'
miRNA:   3'- -CCCCCGCGUGaCGuCU------------UGGa--AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 107342 0.72 0.49536
Target:  5'- cGGGGCGCGaaugGcCAGAGCCcgCACCc -3'
miRNA:   3'- cCCCCGCGUga--C-GUCUUGGaaGUGGc -5'
6666 3' -57.3 NC_001847.1 + 102693 0.71 0.544196
Target:  5'- uGGcGGGCGUguGCUGCGGcagcGCCUgggcCACCGc -3'
miRNA:   3'- -CC-CCCGCG--UGACGUCu---UGGAa---GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 53865 0.71 0.574247
Target:  5'- aGGGGGUGCugUGgGGcGGCCgUCucuCCGg -3'
miRNA:   3'- -CCCCCGCGugACgUC-UUGGaAGu--GGC- -5'
6666 3' -57.3 NC_001847.1 + 95114 0.75 0.354353
Target:  5'- uGGGGGCGCGgacgagcCUGCAGucGCCggCGCUGc -3'
miRNA:   3'- -CCCCCGCGU-------GACGUCu-UGGaaGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 108635 0.73 0.421757
Target:  5'- cGGcGGGCGaCGCUGCAGAagugGCCgggGCCGc -3'
miRNA:   3'- -CC-CCCGC-GUGACGUCU----UGGaagUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.