miRNA display CGI


Results 1 - 20 of 208 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 3' -57.3 NC_001847.1 + 134544 0.71 0.564181
Target:  5'- cGGGGCGCGuCgucggGCAGGacacaaagacgGCCUcgUCGCCGc -3'
miRNA:   3'- cCCCCGCGU-Ga----CGUCU-----------UGGA--AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 134516 0.67 0.792424
Target:  5'- cGGGGGCGgGgggagGCGcGGGCCgcgCGCCGc -3'
miRNA:   3'- -CCCCCGCgUga---CGU-CUUGGaa-GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 133990 0.7 0.594496
Target:  5'- --cGGcCGCGCUGcCGGAGCCgcgCGCCGa -3'
miRNA:   3'- cccCC-GCGUGAC-GUCUUGGaa-GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 133928 0.7 0.614853
Target:  5'- cGGGcGGCGCGC-GCuGGAGCUggCGCCc -3'
miRNA:   3'- -CCC-CCGCGUGaCG-UCUUGGaaGUGGc -5'
6666 3' -57.3 NC_001847.1 + 133355 0.66 0.835731
Target:  5'- -aGGGCGUGCUGCugcucucgacgcGGGACCUg-GCCu -3'
miRNA:   3'- ccCCCGCGUGACG------------UCUUGGAagUGGc -5'
6666 3' -57.3 NC_001847.1 + 132678 0.66 0.851819
Target:  5'- cGGGGGCGcCGCcGCccgcucgaucgGGAGCUcgCugCGg -3'
miRNA:   3'- -CCCCCGC-GUGaCG-----------UCUUGGaaGugGC- -5'
6666 3' -57.3 NC_001847.1 + 132382 0.69 0.675987
Target:  5'- cGGGGGCGC-CgGCgccGGcGCCgccgCGCCGg -3'
miRNA:   3'- -CCCCCGCGuGaCG---UCuUGGaa--GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 132061 0.67 0.764648
Target:  5'- gGGGGGCGUcaucgcgcuGCUGCAcuacGAgcacaACCUgCGCCu -3'
miRNA:   3'- -CCCCCGCG---------UGACGU----CU-----UGGAaGUGGc -5'
6666 3' -57.3 NC_001847.1 + 131924 0.69 0.669902
Target:  5'- cGGGcGGCGCGCgaGCGGcugcgcgagcuggcgGACCgcugCGCCGu -3'
miRNA:   3'- -CCC-CCGCGUGa-CGUC---------------UUGGaa--GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 131488 0.69 0.696169
Target:  5'- cGGGGaagcaguacGCgGCGCUGguGGACCUgguguacgcgCGCCGc -3'
miRNA:   3'- -CCCC---------CG-CGUGACguCUUGGAa---------GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 131144 0.67 0.792424
Target:  5'- cGGGcccGGCGCcCcGCGGGGCCgcgCGCCc -3'
miRNA:   3'- -CCC---CCGCGuGaCGUCUUGGaa-GUGGc -5'
6666 3' -57.3 NC_001847.1 + 131142 0.68 0.745531
Target:  5'- gGGGGGCGgACUGUuaa--CUUgGCCGc -3'
miRNA:   3'- -CCCCCGCgUGACGucuugGAAgUGGC- -5'
6666 3' -57.3 NC_001847.1 + 130907 0.68 0.726018
Target:  5'- gGGGGGCgGCGgUGCccucggggccAGGACCgagGCCGg -3'
miRNA:   3'- -CCCCCG-CGUgACG----------UCUUGGaagUGGC- -5'
6666 3' -57.3 NC_001847.1 + 130727 0.67 0.774036
Target:  5'- aGGGGGCggagGCGCggaggacGCGGAcagcGCCUggGCCGc -3'
miRNA:   3'- -CCCCCG----CGUGa------CGUCU----UGGAagUGGC- -5'
6666 3' -57.3 NC_001847.1 + 130504 0.68 0.726018
Target:  5'- cGGGcugaGGCGCGCgagcgccgGCGGGccGCCcgCGCCGa -3'
miRNA:   3'- -CCC----CCGCGUGa-------CGUCU--UGGaaGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 130218 0.68 0.716137
Target:  5'- cGGGGGgGCGCUGUu--GCC---GCCGg -3'
miRNA:   3'- -CCCCCgCGUGACGucuUGGaagUGGC- -5'
6666 3' -57.3 NC_001847.1 + 129510 0.7 0.594496
Target:  5'- cGGGcucuuuGGCGCGC-GCGGGACCgcggCGCCc -3'
miRNA:   3'- -CCC------CCGCGUGaCGUCUUGGaa--GUGGc -5'
6666 3' -57.3 NC_001847.1 + 127031 0.67 0.801406
Target:  5'- uGGGGccccGCGC-CUGCgcuGGcGCCgcgUCGCCGa -3'
miRNA:   3'- -CCCC----CGCGuGACG---UCuUGGa--AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 126539 0.66 0.827407
Target:  5'- cGGGGCuuGCGCUGCGGcuGACgcUCGCgCGg -3'
miRNA:   3'- cCCCCG--CGUGACGUC--UUGgaAGUG-GC- -5'
6666 3' -57.3 NC_001847.1 + 125383 0.71 0.564181
Target:  5'- gGGGGGCGCGCgaggucgaGguGGACCgaCGgCGa -3'
miRNA:   3'- -CCCCCGCGUGa-------CguCUUGGaaGUgGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.