miRNA display CGI


Results 21 - 40 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 3' -57.3 NC_001847.1 + 66071 0.72 0.482037
Target:  5'- cGGGGGCGacgcgggcuuugaGCUGCuGGauGCCUucUCGCCGu -3'
miRNA:   3'- -CCCCCGCg------------UGACGuCU--UGGA--AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 107342 0.72 0.49536
Target:  5'- cGGGGCGCGaaugGcCAGAGCCcgCACCc -3'
miRNA:   3'- cCCCCGCGUga--C-GUCUUGGaaGUGGc -5'
6666 3' -57.3 NC_001847.1 + 43242 0.72 0.504978
Target:  5'- uGGGGGCGCGCggGCGGcGCgg-CGCCc -3'
miRNA:   3'- -CCCCCGCGUGa-CGUCuUGgaaGUGGc -5'
6666 3' -57.3 NC_001847.1 + 61266 0.72 0.504978
Target:  5'- cGGGGCGC-CgGCGGAACUgacgCGCCc -3'
miRNA:   3'- cCCCCGCGuGaCGUCUUGGaa--GUGGc -5'
6666 3' -57.3 NC_001847.1 + 96811 0.72 0.524447
Target:  5'- gGGGGGCGCGCagcgGCGGcGACCg-CGCgGg -3'
miRNA:   3'- -CCCCCGCGUGa---CGUC-UUGGaaGUGgC- -5'
6666 3' -57.3 NC_001847.1 + 103490 0.71 0.534289
Target:  5'- cGGGGCGCGCggGCuccGGGCC--CGCCGa -3'
miRNA:   3'- cCCCCGCGUGa-CGu--CUUGGaaGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 61778 0.71 0.534289
Target:  5'- cGGuGGCGCGgUGCGGGuggGCCgggUCGCCc -3'
miRNA:   3'- cCC-CCGCGUgACGUCU---UGGa--AGUGGc -5'
6666 3' -57.3 NC_001847.1 + 42009 0.71 0.544196
Target:  5'- gGGGGGCGC-CgGCAGcccGGCCagcUUCGCCc -3'
miRNA:   3'- -CCCCCGCGuGaCGUC---UUGG---AAGUGGc -5'
6666 3' -57.3 NC_001847.1 + 102693 0.71 0.544196
Target:  5'- uGGcGGGCGUguGCUGCGGcagcGCCUgggcCACCGc -3'
miRNA:   3'- -CC-CCCGCG--UGACGUCu---UGGAa---GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 83270 0.71 0.544196
Target:  5'- cGGGGGCGgGC-GCAGAGgCgcaCACCu -3'
miRNA:   3'- -CCCCCGCgUGaCGUCUUgGaa-GUGGc -5'
6666 3' -57.3 NC_001847.1 + 78982 0.71 0.544196
Target:  5'- cGGGGGCGUgcucgggcgGCUGCuGAGCCacC-CCGg -3'
miRNA:   3'- -CCCCCGCG---------UGACGuCUUGGaaGuGGC- -5'
6666 3' -57.3 NC_001847.1 + 101481 0.71 0.544196
Target:  5'- aGGGcGGCGCGCUaGCG--ACCgaggCGCCGg -3'
miRNA:   3'- -CCC-CCGCGUGA-CGUcuUGGaa--GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 81346 0.71 0.558163
Target:  5'- aGGGGGCGCagaccuccucgcggcGgCUGCGGugcuGCCgcccUCGCCGc -3'
miRNA:   3'- -CCCCCGCG---------------U-GACGUCu---UGGa---AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 62450 0.71 0.563177
Target:  5'- cGGGcGGC-CGCUcuccccggccucaGCAGGGCCggggUCGCCGg -3'
miRNA:   3'- -CCC-CCGcGUGA-------------CGUCUUGGa---AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 125383 0.71 0.564181
Target:  5'- gGGGGGCGCGCgaggucgaGguGGACCgaCGgCGa -3'
miRNA:   3'- -CCCCCGCGUGa-------CguCUUGGaaGUgGC- -5'
6666 3' -57.3 NC_001847.1 + 134544 0.71 0.564181
Target:  5'- cGGGGCGCGuCgucggGCAGGacacaaagacgGCCUcgUCGCCGc -3'
miRNA:   3'- cCCCCGCGU-Ga----CGUCU-----------UGGA--AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 70373 0.71 0.574247
Target:  5'- aGGGGGCGC-CgggGCGcGAGCUcgCGCUGg -3'
miRNA:   3'- -CCCCCGCGuGa--CGU-CUUGGaaGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 79634 0.71 0.574247
Target:  5'- cGGcGGGCGCcgccaGCaGCAGGGCCcacgUCGCCc -3'
miRNA:   3'- -CC-CCCGCG-----UGaCGUCUUGGa---AGUGGc -5'
6666 3' -57.3 NC_001847.1 + 53865 0.71 0.574247
Target:  5'- aGGGGGUGCugUGgGGcGGCCgUCucuCCGg -3'
miRNA:   3'- -CCCCCGCGugACgUC-UUGGaAGu--GGC- -5'
6666 3' -57.3 NC_001847.1 + 110129 0.71 0.574247
Target:  5'- uGGGGGCGCugaaGCUGCuGGACUcgaUgGCCa -3'
miRNA:   3'- -CCCCCGCG----UGACGuCUUGGa--AgUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.