miRNA display CGI


Results 21 - 40 of 304 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 5' -53.1 NC_001847.1 + 8566 0.67 0.922538
Target:  5'- -aCGGCGauGAGGCGAGGc-AGCGUg-- -3'
miRNA:   3'- ggGCCGU--UUCCGUUCCauUCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 8614 0.74 0.575264
Target:  5'- gCUCGGcCGGGGGCGGGGggagGAGCGCc-- -3'
miRNA:   3'- -GGGCC-GUUUCCGUUCCa---UUCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 8713 0.67 0.935496
Target:  5'- gCCaCGGCugguGGGCGGGGcAugugugugucacccgAGCGCAUUu -3'
miRNA:   3'- -GG-GCCGuu--UCCGUUCCaU---------------UCGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 8741 1.11 0.003203
Target:  5'- cCCCGGCAAAGGCAAGGUAAGCGCAUCc -3'
miRNA:   3'- -GGGCCGUUUCCGUUCCAUUCGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 9000 0.67 0.938505
Target:  5'- --gGGUggGGGCuGGGUGGGCGgAgcUCa -3'
miRNA:   3'- gggCCGuuUCCGuUCCAUUCGCgU--AG- -5'
6666 5' -53.1 NC_001847.1 + 10855 0.66 0.96366
Target:  5'- gCgUGGCcGAGGCGcGGcGGGCGCGg- -3'
miRNA:   3'- -GgGCCGuUUCCGUuCCaUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 10883 0.66 0.947877
Target:  5'- gCCCaGGCAGAccgccugcGGCAGcuGGUGgcGGCGCGg- -3'
miRNA:   3'- -GGG-CCGUUU--------CCGUU--CCAU--UCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 11660 0.67 0.933439
Target:  5'- uUCCGGCGgcGGUgaAGGGggcGCuGCAUCg -3'
miRNA:   3'- -GGGCCGUuuCCG--UUCCauuCG-CGUAG- -5'
6666 5' -53.1 NC_001847.1 + 12307 0.69 0.876431
Target:  5'- gCCagGGCGcGGGCccGGUGGGCGCGc- -3'
miRNA:   3'- -GGg-CCGUuUCCGuuCCAUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 12941 0.66 0.956251
Target:  5'- aCCCGGCcccGGCuAGuGUGgcGGCGCGc- -3'
miRNA:   3'- -GGGCCGuuuCCGuUC-CAU--UCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 13113 0.67 0.933439
Target:  5'- uCgCGGCcGGGGCGcgcGGgcGGCGCcgCg -3'
miRNA:   3'- -GgGCCGuUUCCGUu--CCauUCGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 14222 0.75 0.533789
Target:  5'- gCCGGcCGGGGGCGuGGUGAGgGCAa- -3'
miRNA:   3'- gGGCC-GUUUCCGUuCCAUUCgCGUag -5'
6666 5' -53.1 NC_001847.1 + 14684 0.67 0.928117
Target:  5'- gCCGGCGGcgcGGCGAuGGagcAGGCGCAg- -3'
miRNA:   3'- gGGCCGUUu--CCGUU-CCa--UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 16650 0.68 0.897679
Target:  5'- uCuuGGCGAAcguGGCGGcGcGGGCGCGUCg -3'
miRNA:   3'- -GggCCGUUU---CCGUUcCaUUCGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 16835 0.69 0.868874
Target:  5'- -gUGGCGcGGGCAucGGGgcGGCGC-UCg -3'
miRNA:   3'- ggGCCGUuUCCGU--UCCauUCGCGuAG- -5'
6666 5' -53.1 NC_001847.1 + 17083 0.67 0.938505
Target:  5'- gUCCGGCAaucugcGAGGuCGGGGUcGGgGuCGUCc -3'
miRNA:   3'- -GGGCCGU------UUCC-GUUCCAuUCgC-GUAG- -5'
6666 5' -53.1 NC_001847.1 + 18081 0.67 0.938505
Target:  5'- --gGGCGGAGGCGAGGgcgAGGCuuccGCcUCc -3'
miRNA:   3'- gggCCGUUUCCGUUCCa--UUCG----CGuAG- -5'
6666 5' -53.1 NC_001847.1 + 19189 0.68 0.890838
Target:  5'- -aCGGCGGGGGCGGGGUcuguGGCcCAg- -3'
miRNA:   3'- ggGCCGUUUCCGUUCCAu---UCGcGUag -5'
6666 5' -53.1 NC_001847.1 + 19742 0.7 0.806342
Target:  5'- aCgCGGCGggccgcuuagcgggAAGGCGGGGUGcgggcucGGCGCAgUCa -3'
miRNA:   3'- -GgGCCGU--------------UUCCGUUCCAU-------UCGCGU-AG- -5'
6666 5' -53.1 NC_001847.1 + 19800 0.67 0.938505
Target:  5'- gUCGGCGGAGGCGGuggcGGUGgcGGgGCGg- -3'
miRNA:   3'- gGGCCGUUUCCGUU----CCAU--UCgCGUag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.