miRNA display CGI


Results 1 - 20 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 5' -53.1 NC_001847.1 + 67 0.76 0.472798
Target:  5'- gCgGGCGGGGGCGGGGUGggggaugGGCGCGg- -3'
miRNA:   3'- gGgCCGUUUCCGUUCCAU-------UCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 152 0.69 0.844862
Target:  5'- cCCCGGCcgGGGGGcCGGGGUuc-UGCGUCu -3'
miRNA:   3'- -GGGCCG--UUUCC-GUUCCAuucGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 1415 0.66 0.956251
Target:  5'- -gCGGCAcGGGCAccgcGGUGcgcgggcccaGGCGCGUg -3'
miRNA:   3'- ggGCCGUuUCCGUu---CCAU----------UCGCGUAg -5'
6666 5' -53.1 NC_001847.1 + 1476 0.66 0.947877
Target:  5'- gCCgCGGCAGAGccGCAGcGgcGGCGCcUCg -3'
miRNA:   3'- -GG-GCCGUUUC--CGUUcCauUCGCGuAG- -5'
6666 5' -53.1 NC_001847.1 + 1853 0.67 0.938505
Target:  5'- gCCCGGCccAGGCGugcGaGUcGGCGC-UCa -3'
miRNA:   3'- -GGGCCGuuUCCGUu--C-CAuUCGCGuAG- -5'
6666 5' -53.1 NC_001847.1 + 3042 0.66 0.955856
Target:  5'- gCUCGGCGGcccGGaGCAcgcgcuccGGGUGcgccgccAGCGCGUCc -3'
miRNA:   3'- -GGGCCGUU---UC-CGU--------UCCAU-------UCGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 3254 0.7 0.827808
Target:  5'- gCCGGC---GGCAGGGgcgccGGCGCcgCg -3'
miRNA:   3'- gGGCCGuuuCCGUUCCau---UCGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 3334 0.69 0.868874
Target:  5'- gCCGGCGccGGCcuccGGGUAGGC-CAUg -3'
miRNA:   3'- gGGCCGUuuCCGu---UCCAUUCGcGUAg -5'
6666 5' -53.1 NC_001847.1 + 3939 0.71 0.781993
Target:  5'- gCUGGCGccgcGGCGGGGggGGCGcCGUCu -3'
miRNA:   3'- gGGCCGUuu--CCGUUCCauUCGC-GUAG- -5'
6666 5' -53.1 NC_001847.1 + 3972 0.72 0.722382
Target:  5'- -gCGGCGAGGGCGccgGGGgccGGGCGCGc- -3'
miRNA:   3'- ggGCCGUUUCCGU---UCCa--UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 4880 0.66 0.956251
Target:  5'- gCgGGCAgcGGCAGGGcccccGCGCcgCu -3'
miRNA:   3'- gGgCCGUuuCCGUUCCauu--CGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 4998 0.67 0.933439
Target:  5'- gCCgCGGCAAAGcGCGgcGGcGgcGGCGCGg- -3'
miRNA:   3'- -GG-GCCGUUUC-CGU--UC-CauUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 5228 0.67 0.943317
Target:  5'- gCCGGCGGGGcGCGcgcggcaaaGGGUuuGCcuGCGUCu -3'
miRNA:   3'- gGGCCGUUUC-CGU---------UCCAuuCG--CGUAG- -5'
6666 5' -53.1 NC_001847.1 + 5284 0.69 0.844862
Target:  5'- aCCCGGggaCGGGGGUAcGGcGAGCGCGa- -3'
miRNA:   3'- -GGGCC---GUUUCCGUuCCaUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 5704 0.67 0.933957
Target:  5'- aCCCGGCAGuucAGGUgcgccuggGAGGgcuuaccugcccgcgGGGCGguUCg -3'
miRNA:   3'- -GGGCCGUU---UCCG--------UUCCa--------------UUCGCguAG- -5'
6666 5' -53.1 NC_001847.1 + 6053 0.74 0.628018
Target:  5'- cCCCGGCGguGAGcaaGCAGGG-AGGCGCGg- -3'
miRNA:   3'- -GGGCCGU--UUC---CGUUCCaUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 6147 0.74 0.628018
Target:  5'- cCCCGGCGguGAGcgaGCAGGG-AGGCGCGg- -3'
miRNA:   3'- -GGGCCGU--UUC---CGUUCCaUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 6692 0.66 0.947432
Target:  5'- gCCGGCc-GGGCGcgcgcgcAGGgccGAGCGCAc- -3'
miRNA:   3'- gGGCCGuuUCCGU-------UCCa--UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 7718 0.69 0.86964
Target:  5'- aUCGGCGAAaauaaauaucGGCGAGGgucgaucgauuaacgGGGCGCAUa -3'
miRNA:   3'- gGGCCGUUU----------CCGUUCCa--------------UUCGCGUAg -5'
6666 5' -53.1 NC_001847.1 + 8453 0.68 0.897679
Target:  5'- gCCgGGuCGGAGGCGgcgccgggccgGGGgcGGCGC-UCg -3'
miRNA:   3'- -GGgCC-GUUUCCGU-----------UCCauUCGCGuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.