miRNA display CGI


Results 1 - 20 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 5' -53.1 NC_001847.1 + 135004 0.71 0.756671
Target:  5'- cCCCGGCcGgggcccgaggcccgcGGGCGGGGccgGGGCGCGg- -3'
miRNA:   3'- -GGGCCGuU---------------UCCGUUCCa--UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 128253 0.72 0.701738
Target:  5'- aCCgGGCAGGGGCGAGccaaaugcaaAAGCGCAa- -3'
miRNA:   3'- -GGgCCGUUUCCGUUCca--------UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 51965 0.72 0.701738
Target:  5'- cCCgCGGCAGugauGCAcuGGGUGcgccGGCGCAUCg -3'
miRNA:   3'- -GG-GCCGUUuc--CGU--UCCAU----UCGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 61555 0.72 0.701738
Target:  5'- gCCGGCAAcGGCAcGGUGcgcgaGGUGCAg- -3'
miRNA:   3'- gGGCCGUUuCCGUuCCAU-----UCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 131908 0.72 0.701738
Target:  5'- gCCGGCGAGcacGGCGcGGgcGGCGCGc- -3'
miRNA:   3'- gGGCCGUUU---CCGUuCCauUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 27702 0.72 0.712096
Target:  5'- gCCGGCGcacgcGGCGGGGgcAAGgGCGUCa -3'
miRNA:   3'- gGGCCGUuu---CCGUUCCa-UUCgCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 83264 0.72 0.732584
Target:  5'- gCgCGGCGGGGGCGGGcGcagAGGCGCAc- -3'
miRNA:   3'- -GgGCCGUUUCCGUUC-Ca--UUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 27908 0.71 0.742694
Target:  5'- gCCCGGCcgcgcuugcGGAGGCcAGGgcGGC-CGUCu -3'
miRNA:   3'- -GGGCCG---------UUUCCGuUCCauUCGcGUAG- -5'
6666 5' -53.1 NC_001847.1 + 54389 0.71 0.7527
Target:  5'- gCgGGCGGccgcGGGCGAGGcGGGCGCcgCc -3'
miRNA:   3'- gGgCCGUU----UCCGUUCCaUUCGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 83184 0.72 0.691316
Target:  5'- gCUGGCGGAcGGCGGGGggcGCGCAg- -3'
miRNA:   3'- gGGCCGUUU-CCGUUCCauuCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 134841 0.73 0.680842
Target:  5'- cUCCGGCGGGGcGCGGGGacGGCGCc-- -3'
miRNA:   3'- -GGGCCGUUUC-CGUUCCauUCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 55452 0.73 0.670325
Target:  5'- gCCUGGCGccGGCGGGGcgcGCGCcgCg -3'
miRNA:   3'- -GGGCCGUuuCCGUUCCauuCGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 75340 0.79 0.356944
Target:  5'- uCCCgGGCGGGcGGCAGuGGUAaaAGCGCGUCu -3'
miRNA:   3'- -GGG-CCGUUU-CCGUU-CCAU--UCGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 24849 0.78 0.398566
Target:  5'- gUCCGGCAcccaGAGGCAgcugaacAGGUugucgcAGCGCGUCg -3'
miRNA:   3'- -GGGCCGU----UUCCGU-------UCCAu-----UCGCGUAG- -5'
6666 5' -53.1 NC_001847.1 + 67 0.76 0.472798
Target:  5'- gCgGGCGGGGGCGGGGUGggggaugGGCGCGg- -3'
miRNA:   3'- gGgCCGUUUCCGUUCCAU-------UCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 111427 0.74 0.575264
Target:  5'- gCUCGGcCGGGGGCGGGGggagGAGCGCc-- -3'
miRNA:   3'- -GGGCC-GUUUCCGUUCCa---UUCGCGuag -5'
6666 5' -53.1 NC_001847.1 + 32878 0.74 0.59629
Target:  5'- uCCUGGCGcuggAGGGCAcGGUGcGCGCcgCg -3'
miRNA:   3'- -GGGCCGU----UUCCGUuCCAUuCGCGuaG- -5'
6666 5' -53.1 NC_001847.1 + 19890 0.74 0.617427
Target:  5'- gCUGGCGGGcGCGAGGUAgaAGCGCAc- -3'
miRNA:   3'- gGGCCGUUUcCGUUCCAU--UCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 108866 0.74 0.628018
Target:  5'- cCCCGGCGguGAGcaaGCAGGG-AGGCGCGg- -3'
miRNA:   3'- -GGGCCGU--UUC---CGUUCCaUUCGCGUag -5'
6666 5' -53.1 NC_001847.1 + 108960 0.74 0.628018
Target:  5'- cCCCGGCGguGAGcgaGCAGGG-AGGCGCGg- -3'
miRNA:   3'- -GGGCCGU--UUC---CGUUCCaUUCGCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.