miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6667 3' -63.8 NC_001847.1 + 51965 0.65 0.567297
Target:  5'- -cCCCCCGCCgUCCGCCagcccguCGGGCgUUGGGa -3'
miRNA:   3'- guGGGGGUGG-GGGUGG-------GCUCG-AGCUC- -5'
6667 3' -63.8 NC_001847.1 + 127546 0.66 0.515161
Target:  5'- --aCCCCACCCCgcaucaauccagccgCGCCCGAGUcaacaGGGg -3'
miRNA:   3'- gugGGGGUGGGG---------------GUGGGCUCGag---CUC- -5'
6667 3' -63.8 NC_001847.1 + 116486 0.66 0.511441
Target:  5'- gUACCUgCACUCCCGCCgGAucGCUCa-- -3'
miRNA:   3'- -GUGGGgGUGGGGGUGGgCU--CGAGcuc -5'
6667 3' -63.8 NC_001847.1 + 121131 0.66 0.539597
Target:  5'- gCGCCgCCGCCUgCugCCGuGCUCu-- -3'
miRNA:   3'- -GUGGgGGUGGGgGugGGCuCGAGcuc -5'
6667 3' -63.8 NC_001847.1 + 24457 0.66 0.539597
Target:  5'- cCGCCCUCACCCUCGCgCaCGcAGCgCGGc -3'
miRNA:   3'- -GUGGGGGUGGGGGUG-G-GC-UCGaGCUc -5'
6667 3' -63.8 NC_001847.1 + 103721 0.66 0.549101
Target:  5'- gGCCgCCgGCCgCCGCCCGccGGCgcCGGGa -3'
miRNA:   3'- gUGG-GGgUGGgGGUGGGC--UCGa-GCUC- -5'
6667 3' -63.8 NC_001847.1 + 30215 0.66 0.549101
Target:  5'- gCGCCgaagCCGCgCgCGCCCGGGC-CGAGg -3'
miRNA:   3'- -GUGGg---GGUGgGgGUGGGCUCGaGCUC- -5'
6667 3' -63.8 NC_001847.1 + 131799 0.66 0.539597
Target:  5'- aCGCCCCCAUggCCUACCCGgaGGC-CGGc -3'
miRNA:   3'- -GUGGGGGUGg-GGGUGGGC--UCGaGCUc -5'
6667 3' -63.8 NC_001847.1 + 30319 0.66 0.511441
Target:  5'- gACgCCCGCCCCC-CCggcggCGGGCUgGAc -3'
miRNA:   3'- gUGgGGGUGGGGGuGG-----GCUCGAgCUc -5'
6667 3' -63.8 NC_001847.1 + 92182 0.66 0.558657
Target:  5'- gGCCggcggCCCGCCCCC-CCCGcGCgCGGc -3'
miRNA:   3'- gUGG-----GGGUGGGGGuGGGCuCGaGCUc -5'
6667 3' -63.8 NC_001847.1 + 31976 0.66 0.539597
Target:  5'- gGCCCCguggaCGCCgCC-CUCGAGCcgCGAGg -3'
miRNA:   3'- gUGGGG-----GUGGgGGuGGGCUCGa-GCUC- -5'
6667 3' -63.8 NC_001847.1 + 45577 0.66 0.539597
Target:  5'- gCGCUCCaCGCCCUCGCC-GGGCgCGAc -3'
miRNA:   3'- -GUGGGG-GUGGGGGUGGgCUCGaGCUc -5'
6667 3' -63.8 NC_001847.1 + 112402 0.66 0.549101
Target:  5'- -uCCCUCGCCCCCAucccCCCGAuccCUCGc- -3'
miRNA:   3'- guGGGGGUGGGGGU----GGGCUc--GAGCuc -5'
6667 3' -63.8 NC_001847.1 + 78320 0.66 0.53865
Target:  5'- cCGCCCCCuccccgcGCCCCCaggcgcgccgGCCCcguGAGCgCGAc -3'
miRNA:   3'- -GUGGGGG-------UGGGGG----------UGGG---CUCGaGCUc -5'
6667 3' -63.8 NC_001847.1 + 123867 0.66 0.511441
Target:  5'- gACCCCCGgCCCUgagGCCCuGGggCGGGg -3'
miRNA:   3'- gUGGGGGUgGGGG---UGGGcUCgaGCUC- -5'
6667 3' -63.8 NC_001847.1 + 18712 0.66 0.511441
Target:  5'- gCGCCCaCCGCCCUCgaGCCCaAGCgcgCGGc -3'
miRNA:   3'- -GUGGG-GGUGGGGG--UGGGcUCGa--GCUc -5'
6667 3' -63.8 NC_001847.1 + 107239 0.66 0.558657
Target:  5'- gCGCCCuCCGCCCCCucgGCCUcGGCgcacuccgCGAc -3'
miRNA:   3'- -GUGGG-GGUGGGGG---UGGGcUCGa-------GCUc -5'
6667 3' -63.8 NC_001847.1 + 30971 0.66 0.549101
Target:  5'- uGCCCCCuaguaCCCCugUgGAGCagCGAa -3'
miRNA:   3'- gUGGGGGug---GGGGugGgCUCGa-GCUc -5'
6667 3' -63.8 NC_001847.1 + 53896 0.66 0.520762
Target:  5'- gGCCCCCcguccucgcgacGgCCCCGCCCGgaGGCgacggCGAc -3'
miRNA:   3'- gUGGGGG------------UgGGGGUGGGC--UCGa----GCUc -5'
6667 3' -63.8 NC_001847.1 + 66687 0.66 0.549101
Target:  5'- aACCCUCGCCUCCACagCGGGCg---- -3'
miRNA:   3'- gUGGGGGUGGGGGUGg-GCUCGagcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.