miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6667 3' -63.8 NC_001847.1 + 121 0.76 0.139001
Target:  5'- cCGCgCCCCGgCCCCGCCCGcgGGcCUCGGGc -3'
miRNA:   3'- -GUG-GGGGUgGGGGUGGGC--UC-GAGCUC- -5'
6667 3' -63.8 NC_001847.1 + 203 0.86 0.027729
Target:  5'- cCGCCCCCGCCCCCggcgcccggggGCCCGAGCcCGGGc -3'
miRNA:   3'- -GUGGGGGUGGGGG-----------UGGGCUCGaGCUC- -5'
6667 3' -63.8 NC_001847.1 + 245 0.72 0.22995
Target:  5'- gCGCCCCgACgCCCggcgcccagggGCCCGAGCcCGGGg -3'
miRNA:   3'- -GUGGGGgUGgGGG-----------UGGGCUCGaGCUC- -5'
6667 3' -63.8 NC_001847.1 + 307 0.72 0.252157
Target:  5'- -gUCCCCGCgCCCCGCCgGAGCUUc-- -3'
miRNA:   3'- guGGGGGUG-GGGGUGGgCUCGAGcuc -5'
6667 3' -63.8 NC_001847.1 + 336 0.67 0.465962
Target:  5'- cCACgCCCGCgUCCCuCCCGGGCUucgcgcccCGGGg -3'
miRNA:   3'- -GUGgGGGUG-GGGGuGGGCUCGA--------GCUC- -5'
6667 3' -63.8 NC_001847.1 + 640 0.67 0.456237
Target:  5'- -cCCCCCGCCCCCgagGCCCGAcaaugaagaaagaGCcgcacUCGGa -3'
miRNA:   3'- guGGGGGUGGGGG---UGGGCU-------------CG-----AGCUc -5'
6667 3' -63.8 NC_001847.1 + 889 0.76 0.139001
Target:  5'- cCACCCCCgagAUCCUCA-UCGAGCUCGAGg -3'
miRNA:   3'- -GUGGGGG---UGGGGGUgGGCUCGAGCUC- -5'
6667 3' -63.8 NC_001847.1 + 908 0.66 0.549101
Target:  5'- gGCCgCCgGCCgCCGCCCGccGGCgcCGGGa -3'
miRNA:   3'- gUGG-GGgUGGgGGUGGGC--UCGa-GCUC- -5'
6667 3' -63.8 NC_001847.1 + 939 0.68 0.422669
Target:  5'- aGCCCgaGCCCgCGCCCGGGgaCGAc -3'
miRNA:   3'- gUGGGggUGGGgGUGGGCUCgaGCUc -5'
6667 3' -63.8 NC_001847.1 + 999 0.66 0.558657
Target:  5'- gCACCUUCuGCCCCCACCagcuGCUagcaGAGg -3'
miRNA:   3'- -GUGGGGG-UGGGGGUGGgcu-CGAg---CUC- -5'
6667 3' -63.8 NC_001847.1 + 1421 0.68 0.422669
Target:  5'- gCGgCCCCGCgCCCCGCCaGGcacuauuugcGCUCGGGu -3'
miRNA:   3'- -GUgGGGGUG-GGGGUGGgCU----------CGAGCUC- -5'
6667 3' -63.8 NC_001847.1 + 4278 0.68 0.40604
Target:  5'- gGCCUugaggggcgCCGCCCCCGCCUcGGCUuCGAu -3'
miRNA:   3'- gUGGG---------GGUGGGGGUGGGcUCGA-GCUc -5'
6667 3' -63.8 NC_001847.1 + 4346 0.67 0.474895
Target:  5'- cCGCCUCCGCCCCgGCCgCGGccgccuccaccGCgaccgCGAGc -3'
miRNA:   3'- -GUGGGGGUGGGGgUGG-GCU-----------CGa----GCUC- -5'
6667 3' -63.8 NC_001847.1 + 4426 0.66 0.558657
Target:  5'- gCGCCCuCCGCCCCCucgGCCUcGGCgcacuccgCGAc -3'
miRNA:   3'- -GUGGG-GGUGGGGG---UGGGcUCGa-------GCUc -5'
6667 3' -63.8 NC_001847.1 + 4590 0.73 0.204536
Target:  5'- -cUCCCCGCCCaCCAUCCGccacAGCUCGGc -3'
miRNA:   3'- guGGGGGUGGG-GGUGGGC----UCGAGCUc -5'
6667 3' -63.8 NC_001847.1 + 5147 0.69 0.381883
Target:  5'- -cCCCCCACCCCCACCgCGcGUg---- -3'
miRNA:   3'- guGGGGGUGGGGGUGG-GCuCGagcuc -5'
6667 3' -63.8 NC_001847.1 + 5818 0.7 0.336526
Target:  5'- aCGCCCCCgGCCCCgCGCCCG-GCa---- -3'
miRNA:   3'- -GUGGGGG-UGGGG-GUGGGCuCGagcuc -5'
6667 3' -63.8 NC_001847.1 + 6968 0.68 0.439701
Target:  5'- uGCCgCCGCCCCCugCCauAGCUUGc- -3'
miRNA:   3'- gUGGgGGUGGGGGugGGc-UCGAGCuc -5'
6667 3' -63.8 NC_001847.1 + 7506 0.67 0.474895
Target:  5'- cCAUCCCC-CUCCCACUCGGG-UCGuAGc -3'
miRNA:   3'- -GUGGGGGuGGGGGUGGGCUCgAGC-UC- -5'
6667 3' -63.8 NC_001847.1 + 8813 1.06 0.000846
Target:  5'- uCACCCCCACCCCCACCCGAGCUCGAGc -3'
miRNA:   3'- -GUGGGGGUGGGGGUGGGCUCGAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.