miRNA display CGI


Results 21 - 40 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6667 3' -63.8 NC_001847.1 + 80704 0.76 0.129083
Target:  5'- -gUCCCCGCCCCCcucgucucuGCCCGGGCcgcCGAGg -3'
miRNA:   3'- guGGGGGUGGGGG---------UGGGCUCGa--GCUC- -5'
6667 3' -63.8 NC_001847.1 + 889 0.76 0.139001
Target:  5'- cCACCCCCgagAUCCUCA-UCGAGCUCGAGg -3'
miRNA:   3'- -GUGGGGG---UGGGGGUgGGCUCGAGCUC- -5'
6667 3' -63.8 NC_001847.1 + 88706 0.76 0.139001
Target:  5'- gCAUCCCCACCgCCgCGCCCGAggaggcugugcuGCUCGAu -3'
miRNA:   3'- -GUGGGGGUGG-GG-GUGGGCU------------CGAGCUc -5'
6667 3' -63.8 NC_001847.1 + 121 0.76 0.139001
Target:  5'- cCGCgCCCCGgCCCCGCCCGcgGGcCUCGGGc -3'
miRNA:   3'- -GUG-GGGGUgGGGGUGGGC--UC-GAGCUC- -5'
6667 3' -63.8 NC_001847.1 + 111772 0.76 0.139001
Target:  5'- cCAgCCCCACCCUCAUCuCGGGCcCGGGg -3'
miRNA:   3'- -GUgGGGGUGGGGGUGG-GCUCGaGCUC- -5'
6667 3' -63.8 NC_001847.1 + 102934 0.76 0.139001
Target:  5'- cCGCgCCCCGgCCCCGCCCGcgGGcCUCGGGc -3'
miRNA:   3'- -GUG-GGGGUgGGGGUGGGC--UC-GAGCUC- -5'
6667 3' -63.8 NC_001847.1 + 104720 0.76 0.142459
Target:  5'- gCGCCUCCGCgCCCGCCaCGAGCUUGc- -3'
miRNA:   3'- -GUGGGGGUGgGGGUGG-GCUCGAGCuc -5'
6667 3' -63.8 NC_001847.1 + 115525 0.75 0.145996
Target:  5'- gACgCCgGCgCCCCggGCCCGAGCUCGGGc -3'
miRNA:   3'- gUGgGGgUG-GGGG--UGGGCUCGAGCUC- -5'
6667 3' -63.8 NC_001847.1 + 120818 0.75 0.145996
Target:  5'- cCACgCCCGgCCCCACCgCGAGCagCGGGa -3'
miRNA:   3'- -GUGgGGGUgGGGGUGG-GCUCGa-GCUC- -5'
6667 3' -63.8 NC_001847.1 + 81295 0.75 0.149613
Target:  5'- gCACCCCCugACCCCCGCgCCG-GCUCu-- -3'
miRNA:   3'- -GUGGGGG--UGGGGGUG-GGCuCGAGcuc -5'
6667 3' -63.8 NC_001847.1 + 107490 0.74 0.190484
Target:  5'- cCACCCUauaACaCCCgACCCGAGCgCGAGu -3'
miRNA:   3'- -GUGGGGg--UG-GGGgUGGGCUCGaGCUC- -5'
6667 3' -63.8 NC_001847.1 + 34303 0.73 0.195071
Target:  5'- gCGCUCCgGCCCuggccggagCCGCCCGGGC-CGAGg -3'
miRNA:   3'- -GUGGGGgUGGG---------GGUGGGCUCGaGCUC- -5'
6667 3' -63.8 NC_001847.1 + 126661 0.73 0.204536
Target:  5'- gGgCCCCGCCCCCGgCCGAGCg---- -3'
miRNA:   3'- gUgGGGGUGGGGGUgGGCUCGagcuc -5'
6667 3' -63.8 NC_001847.1 + 107403 0.73 0.204536
Target:  5'- -cUCCCCGCCCaCCAUCCGccacAGCUCGGc -3'
miRNA:   3'- guGGGGGUGGG-GGUGGGC----UCGAGCUc -5'
6667 3' -63.8 NC_001847.1 + 23848 0.73 0.204536
Target:  5'- gGgCCCCGCCCCCGgCCGAGCg---- -3'
miRNA:   3'- gUgGGGGUGGGGGUgGGCUCGagcuc -5'
6667 3' -63.8 NC_001847.1 + 4590 0.73 0.204536
Target:  5'- -cUCCCCGCCCaCCAUCCGccacAGCUCGGc -3'
miRNA:   3'- guGGGGGUGGG-GGUGGGC----UCGAGCUc -5'
6667 3' -63.8 NC_001847.1 + 91917 0.73 0.209416
Target:  5'- gCGCCCCCACCgCCACcgggcaacggcgCCGAGCaauccaCGAGg -3'
miRNA:   3'- -GUGGGGGUGGgGGUG------------GGCUCGa-----GCUC- -5'
6667 3' -63.8 NC_001847.1 + 61386 0.73 0.214397
Target:  5'- gGCCCgCGCCgCCGCCCGGcGCUUGGa -3'
miRNA:   3'- gUGGGgGUGGgGGUGGGCU-CGAGCUc -5'
6667 3' -63.8 NC_001847.1 + 75852 0.73 0.224662
Target:  5'- gCACCCUgGguacgguuuCCCgCCGCCgGGGCUCGAGa -3'
miRNA:   3'- -GUGGGGgU---------GGG-GGUGGgCUCGAGCUC- -5'
6667 3' -63.8 NC_001847.1 + 36410 0.73 0.224662
Target:  5'- gGCCCCgGCCCCgGCCCcGGCUuCGGc -3'
miRNA:   3'- gUGGGGgUGGGGgUGGGcUCGA-GCUc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.