Results 21 - 40 of 202 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6667 | 3' | -63.8 | NC_001847.1 | + | 80704 | 0.76 | 0.129083 |
Target: 5'- -gUCCCCGCCCCCcucgucucuGCCCGGGCcgcCGAGg -3' miRNA: 3'- guGGGGGUGGGGG---------UGGGCUCGa--GCUC- -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 889 | 0.76 | 0.139001 |
Target: 5'- cCACCCCCgagAUCCUCA-UCGAGCUCGAGg -3' miRNA: 3'- -GUGGGGG---UGGGGGUgGGCUCGAGCUC- -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 88706 | 0.76 | 0.139001 |
Target: 5'- gCAUCCCCACCgCCgCGCCCGAggaggcugugcuGCUCGAu -3' miRNA: 3'- -GUGGGGGUGG-GG-GUGGGCU------------CGAGCUc -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 121 | 0.76 | 0.139001 |
Target: 5'- cCGCgCCCCGgCCCCGCCCGcgGGcCUCGGGc -3' miRNA: 3'- -GUG-GGGGUgGGGGUGGGC--UC-GAGCUC- -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 111772 | 0.76 | 0.139001 |
Target: 5'- cCAgCCCCACCCUCAUCuCGGGCcCGGGg -3' miRNA: 3'- -GUgGGGGUGGGGGUGG-GCUCGaGCUC- -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 102934 | 0.76 | 0.139001 |
Target: 5'- cCGCgCCCCGgCCCCGCCCGcgGGcCUCGGGc -3' miRNA: 3'- -GUG-GGGGUgGGGGUGGGC--UC-GAGCUC- -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 104720 | 0.76 | 0.142459 |
Target: 5'- gCGCCUCCGCgCCCGCCaCGAGCUUGc- -3' miRNA: 3'- -GUGGGGGUGgGGGUGG-GCUCGAGCuc -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 115525 | 0.75 | 0.145996 |
Target: 5'- gACgCCgGCgCCCCggGCCCGAGCUCGGGc -3' miRNA: 3'- gUGgGGgUG-GGGG--UGGGCUCGAGCUC- -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 120818 | 0.75 | 0.145996 |
Target: 5'- cCACgCCCGgCCCCACCgCGAGCagCGGGa -3' miRNA: 3'- -GUGgGGGUgGGGGUGG-GCUCGa-GCUC- -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 81295 | 0.75 | 0.149613 |
Target: 5'- gCACCCCCugACCCCCGCgCCG-GCUCu-- -3' miRNA: 3'- -GUGGGGG--UGGGGGUG-GGCuCGAGcuc -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 107490 | 0.74 | 0.190484 |
Target: 5'- cCACCCUauaACaCCCgACCCGAGCgCGAGu -3' miRNA: 3'- -GUGGGGg--UG-GGGgUGGGCUCGaGCUC- -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 34303 | 0.73 | 0.195071 |
Target: 5'- gCGCUCCgGCCCuggccggagCCGCCCGGGC-CGAGg -3' miRNA: 3'- -GUGGGGgUGGG---------GGUGGGCUCGaGCUC- -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 126661 | 0.73 | 0.204536 |
Target: 5'- gGgCCCCGCCCCCGgCCGAGCg---- -3' miRNA: 3'- gUgGGGGUGGGGGUgGGCUCGagcuc -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 107403 | 0.73 | 0.204536 |
Target: 5'- -cUCCCCGCCCaCCAUCCGccacAGCUCGGc -3' miRNA: 3'- guGGGGGUGGG-GGUGGGC----UCGAGCUc -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 23848 | 0.73 | 0.204536 |
Target: 5'- gGgCCCCGCCCCCGgCCGAGCg---- -3' miRNA: 3'- gUgGGGGUGGGGGUgGGCUCGagcuc -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 4590 | 0.73 | 0.204536 |
Target: 5'- -cUCCCCGCCCaCCAUCCGccacAGCUCGGc -3' miRNA: 3'- guGGGGGUGGG-GGUGGGC----UCGAGCUc -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 91917 | 0.73 | 0.209416 |
Target: 5'- gCGCCCCCACCgCCACcgggcaacggcgCCGAGCaauccaCGAGg -3' miRNA: 3'- -GUGGGGGUGGgGGUG------------GGCUCGa-----GCUC- -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 61386 | 0.73 | 0.214397 |
Target: 5'- gGCCCgCGCCgCCGCCCGGcGCUUGGa -3' miRNA: 3'- gUGGGgGUGGgGGUGGGCU-CGAGCUc -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 75852 | 0.73 | 0.224662 |
Target: 5'- gCACCCUgGguacgguuuCCCgCCGCCgGGGCUCGAGa -3' miRNA: 3'- -GUGGGGgU---------GGG-GGUGGgCUCGAGCUC- -5' |
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6667 | 3' | -63.8 | NC_001847.1 | + | 36410 | 0.73 | 0.224662 |
Target: 5'- gGCCCCgGCCCCgGCCCcGGCUuCGGc -3' miRNA: 3'- gUGGGGgUGGGGgUGGGcUCGA-GCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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