miRNA display CGI


Results 21 - 40 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6667 3' -63.8 NC_001847.1 + 31976 0.66 0.539597
Target:  5'- gGCCCCguggaCGCCgCC-CUCGAGCcgCGAGg -3'
miRNA:   3'- gUGGGG-----GUGGgGGuGGGCUCGa-GCUC- -5'
6667 3' -63.8 NC_001847.1 + 45577 0.66 0.539597
Target:  5'- gCGCUCCaCGCCCUCGCC-GGGCgCGAc -3'
miRNA:   3'- -GUGGGG-GUGGGGGUGGgCUCGaGCUc -5'
6667 3' -63.8 NC_001847.1 + 24457 0.66 0.539597
Target:  5'- cCGCCCUCACCCUCGCgCaCGcAGCgCGGc -3'
miRNA:   3'- -GUGGGGGUGGGGGUG-G-GC-UCGaGCUc -5'
6667 3' -63.8 NC_001847.1 + 28986 0.66 0.539597
Target:  5'- aCGCCCCCAUggCCUACCCGgaGGC-CGGc -3'
miRNA:   3'- -GUGGGGGUGg-GGGUGGGC--UCGaGCUc -5'
6667 3' -63.8 NC_001847.1 + 47369 0.66 0.539597
Target:  5'- uGCCCCC-CCggcggCCCGa-CGAGCUCGAc -3'
miRNA:   3'- gUGGGGGuGG-----GGGUggGCUCGAGCUc -5'
6667 3' -63.8 NC_001847.1 + 78320 0.66 0.53865
Target:  5'- cCGCCCCCuccccgcGCCCCCaggcgcgccgGCCCcguGAGCgCGAc -3'
miRNA:   3'- -GUGGGGG-------UGGGGG----------UGGG---CUCGaGCUc -5'
6667 3' -63.8 NC_001847.1 + 114637 0.66 0.530149
Target:  5'- gGCCCCCGCCCgcgacgaCGCgCGAGC-CGu- -3'
miRNA:   3'- gUGGGGGUGGGg------GUGgGCUCGaGCuc -5'
6667 3' -63.8 NC_001847.1 + 98185 0.66 0.530149
Target:  5'- gCGCCCgCgcuggccgcaGCCCCCGCUCG-GCcagCGAGa -3'
miRNA:   3'- -GUGGGgG----------UGGGGGUGGGCuCGa--GCUC- -5'
6667 3' -63.8 NC_001847.1 + 131344 0.66 0.527326
Target:  5'- aCGCCCCgugccggcaCGCCgucgugcagcacauCCCGCCCGGgcuGCUCGAc -3'
miRNA:   3'- -GUGGGG---------GUGG--------------GGGUGGGCU---CGAGCUc -5'
6667 3' -63.8 NC_001847.1 + 106569 0.66 0.527326
Target:  5'- aCGCCUCagccaGCCCCgGCgCCGuguccucgucgucuGGCUCGGGa -3'
miRNA:   3'- -GUGGGGg----UGGGGgUG-GGC--------------UCGAGCUC- -5'
6667 3' -63.8 NC_001847.1 + 53896 0.66 0.520762
Target:  5'- gGCCCCCcguccucgcgacGgCCCCGCCCGgaGGCgacggCGAc -3'
miRNA:   3'- gUGGGGG------------UgGGGGUGGGC--UCGa----GCUc -5'
6667 3' -63.8 NC_001847.1 + 24733 0.66 0.515161
Target:  5'- --aCCCCACCCCgcaucaauccagccgCGCCCGAGUcaacaGGGg -3'
miRNA:   3'- gugGGGGUGGGG---------------GUGGGCUCGag---CUC- -5'
6667 3' -63.8 NC_001847.1 + 127546 0.66 0.515161
Target:  5'- --aCCCCACCCCgcaucaauccagccgCGCCCGAGUcaacaGGGg -3'
miRNA:   3'- gugGGGGUGGGG---------------GUGGGCUCGag---CUC- -5'
6667 3' -63.8 NC_001847.1 + 123867 0.66 0.511441
Target:  5'- gACCCCCGgCCCUgagGCCCuGGggCGGGg -3'
miRNA:   3'- gUGGGGGUgGGGG---UGGGcUCgaGCUC- -5'
6667 3' -63.8 NC_001847.1 + 18712 0.66 0.511441
Target:  5'- gCGCCCaCCGCCCUCgaGCCCaAGCgcgCGGc -3'
miRNA:   3'- -GUGGG-GGUGGGGG--UGGGcUCGa--GCUc -5'
6667 3' -63.8 NC_001847.1 + 116486 0.66 0.511441
Target:  5'- gUACCUgCACUCCCGCCgGAucGCUCa-- -3'
miRNA:   3'- -GUGGGgGUGGGGGUGGgCU--CGAGcuc -5'
6667 3' -63.8 NC_001847.1 + 30319 0.66 0.511441
Target:  5'- gACgCCCGCCCCC-CCggcggCGGGCUgGAc -3'
miRNA:   3'- gUGgGGGUGGGGGuGG-----GCUCGAgCUc -5'
6667 3' -63.8 NC_001847.1 + 21054 0.66 0.511441
Target:  5'- gACCCCCGgCCCUgagGCCCuGGggCGGGg -3'
miRNA:   3'- gUGGGGGUgGGGG---UGGGcUCgaGCUC- -5'
6667 3' -63.8 NC_001847.1 + 129002 0.66 0.511441
Target:  5'- uCACCgCCACCgagCCC-CCCGAugGCggCGAGg -3'
miRNA:   3'- -GUGGgGGUGG---GGGuGGGCU--CGa-GCUC- -5'
6667 3' -63.8 NC_001847.1 + 16480 0.66 0.510513
Target:  5'- aACCCCCG-CCCUGCCUGGGUggggcacUCGGu -3'
miRNA:   3'- gUGGGGGUgGGGGUGGGCUCG-------AGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.