miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6668 3' -54.8 NC_001847.1 + 27662 0.68 0.826596
Target:  5'- -aAGaCCCGGCCcUGCUCgacGCGGcGCg -3'
miRNA:   3'- ggUC-GGGUCGGuACGAGaa-CGUCuUG- -5'
6668 3' -54.8 NC_001847.1 + 65448 0.66 0.915613
Target:  5'- aCCAGCCCGcCCGUGUag--GCGGGcgcGCg -3'
miRNA:   3'- -GGUCGGGUcGGUACGagaaCGUCU---UG- -5'
6668 3' -54.8 NC_001847.1 + 88649 0.66 0.915613
Target:  5'- gCCuGCUCAG-CGUGCUgUUGCGcGACu -3'
miRNA:   3'- -GGuCGGGUCgGUACGAgAACGUcUUG- -5'
6668 3' -54.8 NC_001847.1 + 63068 0.72 0.606226
Target:  5'- gCCAGCaCCAGCCA--CUCgucgccauggUGCGGGACc -3'
miRNA:   3'- -GGUCG-GGUCGGUacGAGa---------ACGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 78795 0.76 0.3996
Target:  5'- gCCGGCCCguGGCCAUGUcgcgCUUGUAGuAGCc -3'
miRNA:   3'- -GGUCGGG--UCGGUACGa---GAACGUC-UUG- -5'
6668 3' -54.8 NC_001847.1 + 115420 0.66 0.9095
Target:  5'- gCCGcGUCCGGCCAacCUCgucGCGGGGCc -3'
miRNA:   3'- -GGU-CGGGUCGGUacGAGaa-CGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 4610 0.72 0.606226
Target:  5'- aCAGCUCGGCCA-GCUCggcGCGGGc- -3'
miRNA:   3'- gGUCGGGUCGGUaCGAGaa-CGUCUug -5'
6668 3' -54.8 NC_001847.1 + 82656 0.71 0.627317
Target:  5'- gUCAGCuCCA-CCAUGCUCUggGCgaAGAACu -3'
miRNA:   3'- -GGUCG-GGUcGGUACGAGAa-CG--UCUUG- -5'
6668 3' -54.8 NC_001847.1 + 87003 0.7 0.700786
Target:  5'- gCCGGCCCGGCgGUuaccugggccgcGC-CUcGCGGGACa -3'
miRNA:   3'- -GGUCGGGUCGgUA------------CGaGAaCGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 1351 0.69 0.741626
Target:  5'- cCCuGCgCGGCCAUGUcCUUGCGcccgucGAGCg -3'
miRNA:   3'- -GGuCGgGUCGGUACGaGAACGU------CUUG- -5'
6668 3' -54.8 NC_001847.1 + 85257 0.68 0.799634
Target:  5'- cCCAGCacgUAGCCGUGCagcagCUcGCAGAguGCg -3'
miRNA:   3'- -GGUCGg--GUCGGUACGa----GAaCGUCU--UG- -5'
6668 3' -54.8 NC_001847.1 + 103237 0.68 0.835218
Target:  5'- gCGGCCgCGGCCGUGaUCU-GCGGcGGCa -3'
miRNA:   3'- gGUCGG-GUCGGUACgAGAaCGUC-UUG- -5'
6668 3' -54.8 NC_001847.1 + 62565 0.67 0.851867
Target:  5'- -uGGCCCAGCCcgcGCaUCgcgUGCAGGu- -3'
miRNA:   3'- ggUCGGGUCGGua-CG-AGa--ACGUCUug -5'
6668 3' -54.8 NC_001847.1 + 52766 0.67 0.851867
Target:  5'- aCCAGCCCgcaggucacgcGGCgCGcGCUCaugUGCAGuGCg -3'
miRNA:   3'- -GGUCGGG-----------UCG-GUaCGAGa--ACGUCuUG- -5'
6668 3' -54.8 NC_001847.1 + 33586 0.67 0.867668
Target:  5'- gCGGCCCgGGCUcgGCggCcUGCGGAAa -3'
miRNA:   3'- gGUCGGG-UCGGuaCGa-GaACGUCUUg -5'
6668 3' -54.8 NC_001847.1 + 16472 0.67 0.875234
Target:  5'- cCCGGCCCAacccccGCCcUGC-CUggGUGGGGCa -3'
miRNA:   3'- -GGUCGGGU------CGGuACGaGAa-CGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 120773 0.66 0.882569
Target:  5'- aCGGCCgCGGCCGUGgcaUCU-GC-GAGCg -3'
miRNA:   3'- gGUCGG-GUCGGUACg--AGAaCGuCUUG- -5'
6668 3' -54.8 NC_001847.1 + 104324 0.66 0.903136
Target:  5'- aCGGCCCcgccGCCGUGUUUgccgcggcgGCAGAcGCg -3'
miRNA:   3'- gGUCGGGu---CGGUACGAGaa-------CGUCU-UG- -5'
6668 3' -54.8 NC_001847.1 + 117235 0.69 0.755569
Target:  5'- aCCGGCaCCuuGGCCGccgucgcccuaauccUGCUC-UGCGGGGCc -3'
miRNA:   3'- -GGUCG-GG--UCGGU---------------ACGAGaACGUCUUG- -5'
6668 3' -54.8 NC_001847.1 + 78975 0.66 0.896524
Target:  5'- gCAGCCUcggGGgCGUGCUCggGCGGcuGCu -3'
miRNA:   3'- gGUCGGG---UCgGUACGAGaaCGUCu-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.