Results 1 - 20 of 131 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 53110 | 0.66 | 0.9095 |
Target: 5'- gCGGCCC-GCCAgcgGCUgCUUGCcauccucGGGCa -3' miRNA: 3'- gGUCGGGuCGGUa--CGA-GAACGu------CUUG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 75144 | 0.66 | 0.915613 |
Target: 5'- cCgGGgCCGGCgGUGCUCUcgguuagguuuUGCAGuuGCu -3' miRNA: 3'- -GgUCgGGUCGgUACGAGA-----------ACGUCu-UG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 59201 | 0.66 | 0.903136 |
Target: 5'- gUAGCCCGagccguccgcGCCGUGCgCUUGCAc--- -3' miRNA: 3'- gGUCGGGU----------CGGUACGaGAACGUcuug -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 5119 | 0.66 | 0.896524 |
Target: 5'- gCGGCCgaagGGCaCGcGCUCUUGUAGAAg -3' miRNA: 3'- gGUCGGg---UCG-GUaCGAGAACGUCUUg -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 36859 | 0.66 | 0.896524 |
Target: 5'- cUCGGCggCGGCCGaGCUCUacGCGGGGCu -3' miRNA: 3'- -GGUCGg-GUCGGUaCGAGAa-CGUCUUG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 133487 | 0.66 | 0.889667 |
Target: 5'- aCGGCCCGGCCG---UCggGCAGGcGCa -3' miRNA: 3'- gGUCGGGUCGGUacgAGaaCGUCU-UG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 78975 | 0.66 | 0.896524 |
Target: 5'- gCAGCCUcggGGgCGUGCUCggGCGGcuGCu -3' miRNA: 3'- gGUCGGG---UCgGUACGAGaaCGUCu-UG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 84917 | 0.66 | 0.889667 |
Target: 5'- gCCGGCCCGGgCA-GCaCUUGCguguagcgcgacAGGACu -3' miRNA: 3'- -GGUCGGGUCgGUaCGaGAACG------------UCUUG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 11641 | 0.66 | 0.903136 |
Target: 5'- gCAGCCCuGGCCccgGCcccgCUUGCGGcGGCc -3' miRNA: 3'- gGUCGGG-UCGGua-CGa---GAACGUC-UUG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 9641 | 0.66 | 0.882569 |
Target: 5'- gCCGGCCC-GCC--GCUCgaGCAGccgGGCg -3' miRNA: 3'- -GGUCGGGuCGGuaCGAGaaCGUC---UUG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 80291 | 0.66 | 0.889667 |
Target: 5'- uUCGGCgCGcGCCAUGCUCgucaguaGCAGGc- -3' miRNA: 3'- -GGUCGgGU-CGGUACGAGaa-----CGUCUug -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 131345 | 0.66 | 0.9095 |
Target: 5'- gCCGccGCCCGGCCGcgugcGCUUcgGCGGcGCg -3' miRNA: 3'- -GGU--CGGGUCGGUa----CGAGaaCGUCuUG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 35412 | 0.66 | 0.903136 |
Target: 5'- gCCGGCUCGGCCuacgagGCgcagaUGCuGAGCa -3' miRNA: 3'- -GGUCGGGUCGGua----CGaga--ACGuCUUG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 99378 | 0.66 | 0.9095 |
Target: 5'- cCCAGCCUAGCaCAcacUGCgugugUGUAGGGg -3' miRNA: 3'- -GGUCGGGUCG-GU---ACGaga--ACGUCUUg -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 100830 | 0.66 | 0.9095 |
Target: 5'- cUCGGCCCGGgCG-GCUCcgGcCAGGGCc -3' miRNA: 3'- -GGUCGGGUCgGUaCGAGaaC-GUCUUG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 99756 | 0.66 | 0.9095 |
Target: 5'- gCCGGCCCGgcagugagccGCCGcgGCUUUggGCGGGGg -3' miRNA: 3'- -GGUCGGGU----------CGGUa-CGAGAa-CGUCUUg -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 77498 | 0.66 | 0.903136 |
Target: 5'- gCCGGCCCgagucgguGGCCGgggaGCUCgcgcgUGCcugcGAGCg -3' miRNA: 3'- -GGUCGGG--------UCGGUa---CGAGa----ACGu---CUUG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 72837 | 0.66 | 0.889667 |
Target: 5'- aCCGcuucGCCaCGGagaCAUGCUCUuUGCGGAGa -3' miRNA: 3'- -GGU----CGG-GUCg--GUACGAGA-ACGUCUUg -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 102045 | 0.66 | 0.896524 |
Target: 5'- cCCGGCCCAuGCUccggcGUGUUCggcaGCAaGGGCa -3' miRNA: 3'- -GGUCGGGU-CGG-----UACGAGaa--CGU-CUUG- -5' |
|||||||
6668 | 3' | -54.8 | NC_001847.1 | + | 3054 | 0.66 | 0.895849 |
Target: 5'- gCAGCCgCAGgCgcagguuGUGCUCguagUGCAGcAGCg -3' miRNA: 3'- gGUCGG-GUCgG-------UACGAGa---ACGUC-UUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home